Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0936 ATGTTTTTTCCAAGATTCTCCTCGATTCTAAAAGGAATGGAAACTCTGTACCCATCTTCTTCTTTCATGCCAAATTCTGACCGGTTCGTTCAACAGAGCACCAACAATACAGAATGGACAAGAGAAGAGAACAAGAGGTTTGAAAGTGCCCTTGCCATATATGATAAGGACACCCCAGATAGGTGGCTGAAGGTGGCAGCCATGATCCCCGGCAAGACCGTGTACGATGTTATCAAGCAGTACAGGGAACTGGAAGAAGATATCGGTGAAATCGAAGCTGGTCGGGTCCCGATCCCTGGGTATCTAACCTCATCCTTCAGCTTTGAGTTGGTTGATCACCAGAATTATGATGCGTACAGAAAGAGGCCTGTGGCTTTCAAGGCTTCTGATCATGAGAGGAAGAAAGGGGTACCTTGGACAGAGGAGGAACACAGGCGTTTTCTGATGGGGCTTCTGAAGTATGGTAAAGGGGATTGGAGGAACATCTCAAGGAACTTTGTGGTGACAAAGACGCCAACCCAAGTGGCGAGTCATGCTCAGAAGTACTACATAAGGCAGAAGCTTTCATCTGGGGGGAACAACAAAAGGAGGCCAAGTATACACGATATAACCATTGTTAATCTTACAGAATCCAGCACCTCACAAGATAACAAGCCCCTTCTGTTCAACGAGTCTCCTATGTTCTCACCACATCATCAGAATCCAACTGATGGGGTTTTCAATTTCAACCCTAATTGTGACAGTTTCCTGCTGTCATCTTCATCTGATATTGCCTCAAAGACCTTAAAACTACAAGGACAGGATCTTTATGACTGTTCCCTCCACGAGGCTTATGGTTATACCAACCTCGAAAACCAGGGTTTCAGGGTAAATCCTGGAGACTTCAATAAGGCCGCAGTTTTAGGTATTCATGCATTGTAA 921 0.4517 MFFPRFSSILKGMETLYPSSSFMPNSDRFVQQSTNNTEWTREENKRFESALAIYDKDTPDRWLKVAAMIPGKTVYDVIKQYRELEEDIGEIEAGRVPIPGYLTSSFSFELVDHQNYDAYRKRPVAFKASDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLSSGGNNKRRPSIHDITIVNLTESSTSQDNKPLLFNESPMFSPHHQNPTDGVFNFNPNCDSFLLSSSSDIASKTLKLQGQDLYDCSLHEAYGYTNLENQGFRVNPGDFNKAAVLGIHAL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0936 306 CDD SANT 38 84 IPR001005 -
Dere05g0936 306 Gene3D - 137 188 - -
Dere05g0936 306 ProSiteProfiles SANT domain profile. 139 187 IPR017884 -
Dere05g0936 306 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 31 248 IPR043363 -
Dere05g0936 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 187 IPR017930 -
Dere05g0936 306 ProSiteProfiles Myb-like domain profile. 131 183 IPR001005 -
Dere05g0936 306 SMART sant 35 87 IPR001005 -
Dere05g0936 306 SMART sant 135 185 IPR001005 -
Dere05g0936 306 Gene3D - 30 98 - -
Dere05g0936 306 FunFam Transcription factor SRM1 31 98 - -
Dere05g0936 306 ProSiteProfiles Myb-like domain profile. 31 85 IPR001005 -
Dere05g0936 306 ProSiteProfiles SANT domain profile. 34 89 IPR017884 -
Dere05g0936 306 Pfam Myb-like DNA-binding domain 38 83 IPR001005 -
Dere05g0936 306 Pfam Myb-like DNA-binding domain 138 182 IPR001005 -
Dere05g0936 306 NCBIfam myb-like DNA-binding domain, SHAQKYF class 134 186 IPR006447 GO:0003677
Dere05g0936 306 SUPERFAMILY Homeodomain-like 133 187 IPR009057 -
Dere05g0936 306 FunFam transcription factor MYB1R1 137 188 - -
Dere05g0936 306 CDD SANT 138 182 IPR001005 -
Dere05g0936 306 SUPERFAMILY Homeodomain-like 37 88 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0936 Dere-ChrDere05 15317892 15319145 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g0936 Myb_DNA-binding 1.3e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0936 05 15317892 15319145 Dere05g0936 05 15317892 15319145 CCT
Dere05g0936 05 15317892 15319145 Dere05g0936 05 15317892 15319145 ECH
Dere04g1475 04 16380936 16383413 Dere05g0936 05 15317892 15319145 ECH
Dere05g0936 05 15317892 15319145 Dere04g1475 04 16380936 16383413 ECH