Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0927 ATGGAAGAGGGCATGTCAGGGTTCTGCATCAGAGCAGGAATTGTTCGTAGTGTTAATAACAATAGTAATGGGAATGGTGGGAGTAGTGGGACTAAGTGTGGACGTTGGAATCCCACATCAGAGCAGGTTAAGCTTCTCACTGAGCTGTTCATGTCTGGACTCAGAACCCCAAGTACTGATCAGATTCAGAAGATCTCTACTCAGCTTAGCTTCTATGGCAAGATTGAGAGCAAGAATGTGTTCTATTGGTTTCAGAACCATAAAGCCAGGGAGAGACAGAAGCGTCGAAAAATCACATTCCATGACAAGGATGTTACTGATATTCGTCGCCAAAACTCTCTGTTTTCTTCTACGCAGAATTTTGAGGAGATAAATGAAGTTTCAAAGCCAGAGAGAGTAATGGAGACTCTTCAACTCTTCCCCTTGAACTCCTTTGGTGAATCAGAAGCAGAGAAGCTGAGGGTGCAAGCAATTGAATATAGAGATGATGATAATACACAGTTTCAATGCACAATGGGGGAACAAATGGAACACCCACCAGTGGATTTGCGCTTGAGCTTTCTGTAA 567 0.4321 MEEGMSGFCIRAGIVRSVNNNSNGNGGSSGTKCGRWNPTSEQVKLLTELFMSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKITFHDKDVTDIRRQNSLFSSTQNFEEINEVSKPERVMETLQLFPLNSFGESEAEKLRVQAIEYRDDDNTQFQCTMGEQMEHPPVDLRLSFL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0927 188 Gene3D - 32 100 - -
Dere05g0927 188 CDD homeodomain 35 95 IPR001356 GO:0003677
Dere05g0927 188 ProSiteProfiles 'Homeobox' domain profile. 29 94 IPR001356 GO:0003677
Dere05g0927 188 Pfam Homeodomain 33 93 IPR001356 GO:0003677
Dere05g0927 188 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 19 107 IPR044555 GO:0003700|GO:0099402
Dere05g0927 188 SUPERFAMILY Homeodomain-like 34 97 IPR009057 -
Dere05g0927 188 FunFam WUSCHEL-related homeobox 11 32 100 - -
Dere05g0927 188 SMART HOX_1 31 98 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0927 Dere-ChrDere05 15120497 15121157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0927 16 188 Wox Gene Family AT3G11260 57.838 3.20e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Dere05g0927 Homeodomain 6.3e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0927 05 15120497 15121157 Dere05g0927 05 15120497 15121157 CCT
Dere05g0927 05 15120497 15121157 Dere05g0927 05 15120497 15121157 ECH