Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0914 ATGCAGCACTTGTTCCTTTCTGGAAACAACTTGAGTGGCAGTTTACCCAATCAAACATTTGGTCAGCAAGAAGGCTTAATAGTTCTTAACATGTCCAAGAATTCCTTGAGTGGTCCCCTTCCATCAGAGTTTGGAAGTATTCCCTCATCTTTTGGTACACTAAAATCCCTTGAAAGCTTAGACCTTTCCAGGAATAACTTGTCAGGCACAATCCCTCATGAACTAAACGATCTTCCAATGTTGAAGGTCTTAAACTTGTCTTTCAACTATCTCCATAGTGAGATTCCAAAAGGTGGAGTGTTTGATAACGTCACTGCAATTTCACTCACAGGAAATGAGGATCTTTGTGGTGGCATACCTCAATTGAAGTTACCTGCATGTTCAAATAAGCCCAAGAAGCCATTTAAAACTATATTTATCCTCATCATCGTGGCAAGCGGTGTTTTTATTTGCGGTGTGGTTTTCATCAACATTTTTTTGAGAAGAAAGTCTAGAAGGTTATCTTCTTCCTCATCTTCTACGCAAAATGTGCTCTTAAGGGTTTCTTATAGAGAGCTACACGATGCAACCAATGGATTTTCTTCATCCAATTTGGTTGGCACAGGAAGCTTTGGTTCTGTATATAAAGGAACTCTTCACCACTACGAAAGACCAGTTGCTGTGAAGGTGTTCAATCTTCAAACACATGGGGCATCAAAGAGTTTTGTAGCTGAATGCAAAGCTCTGAGTCAAGTGCGGCATCGAAATCTTCTAAAGATGCTAACTTGTTGCTCAAGCGTTGACTACAAAGGTGTAGATTTCAAGGCTATAGTTTTTGAGTTCATGCCTAATGGGAGTTTGGAGGATTGGTTGTCCACTAATGAACAGCGTGAAGCTAGAAGTCAATATCTGAATTTTATGCAAAGAATAGATATAGCCATTGATGTAGCTCATGCTTTGGATTATCTTCATCATGATTCCGAGGAAGCCATAGTTCATTATGACATTAAGCCAAGCAACGTTCTTCTTGATGAAGAAATGGTCGCTCACTTGGGAGACTTTGGGTTGGCTAGGCTTCTTCATGGTGTGACGGGCTATTCCAGTACTGGTCAAAATACATCATCAGCAATTAAGGGAACGATTGGGTATATTCCTCCAGAGTATGGAGCAGGTGGGTCAGTGATACCACAAGGGGATATCTACAGCTATGGGGTTCTTCTATTGGAGATGCTCACTGGAAAAAAGCCAACAAATAGCATCTTTGGTGAAGATATGAGCCTGCACAAGTTCTGTAAGTTGGCGTTGCCAGAACGAGTTCTTGAGATTGTGGATGCAAGTTTGCTTGTCCCATTTGAAAGCGACCACCGGGAGGTTATGCAAAAGCCAGATGTGGAACATAAAATTCGAGAGTCATTGGTGAGCTTTGCTAGGATTGGAGTGGCATGTTCTACAGAATTGTCTAGTGAACGAATGAGGATAAAAGATGCTATAGTGGAGTTGCTTGCAATTAAAAAGAGGCTGTCCTCGCCAGGTATCGACCTTTATAAGTAG 1530 0.4131 MQHLFLSGNNLSGSLPNQTFGQQEGLIVLNMSKNSLSGPLPSEFGSIPSSFGTLKSLESLDLSRNNLSGTIPHELNDLPMLKVLNLSFNYLHSEIPKGGVFDNVTAISLTGNEDLCGGIPQLKLPACSNKPKKPFKTIFILIIVASGVFICGVVFINIFLRRKSRRLSSSSSSTQNVLLRVSYRELHDATNGFSSSNLVGTGSFGSVYKGTLHHYERPVAVKVFNLQTHGASKSFVAECKALSQVRHRNLLKMLTCCSSVDYKGVDFKAIVFEFMPNGSLEDWLSTNEQREARSQYLNFMQRIDIAIDVAHALDYLHHDSEEAIVHYDIKPSNVLLDEEMVAHLGDFGLARLLHGVTGYSSTGQNTSSAIKGTIGYIPPEYGAGGSVIPQGDIYSYGVLLLEMLTGKKPTNSIFGEDMSLHKFCKLALPERVLEIVDASLLVPFESDHREVMQKPDVEHKIRESLVSFARIGVACSTELSSERMRIKDAIVELLAIKKRLSSPGIDLYK 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0914 509 SUPERFAMILY L domain-like 2 112 - -
Dere05g0914 509 FunFam LRR receptor-like serine/threonine-protein kinase EFR 164 274 - -
Dere05g0914 509 Pfam Protein kinase domain 195 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0914 509 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 275 504 - -
Dere05g0914 509 SMART serkin_6 193 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0914 509 Pfam Leucine rich repeat 48 91 IPR001611 GO:0005515
Dere05g0914 509 PRINTS Leucine-rich repeat signature 78 91 - -
Dere05g0914 509 PRINTS Leucine-rich repeat signature 57 70 - -
Dere05g0914 509 ProSiteProfiles Protein kinase domain profile. 193 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0914 509 SUPERFAMILY Protein kinase-like (PK-like) 171 425 IPR011009 -
Dere05g0914 509 Gene3D Transferase(Phosphotransferase) domain 1 275 503 - -
Dere05g0914 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 324 336 IPR008271 GO:0004672|GO:0006468
Dere05g0914 509 Gene3D Phosphorylase Kinase; domain 1 156 274 - -
Dere05g0914 509 ProSiteProfiles Leucine-rich repeat profile. 56 79 IPR001611 GO:0005515
Dere05g0914 509 PANTHER OS04G0122200 PROTEIN 2 497 - -
Dere05g0914 509 ProSitePatterns Protein kinases ATP-binding region signature. 199 222 IPR017441 GO:0005524
Dere05g0914 509 Gene3D Ribonuclease Inhibitor 1 135 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0914 Dere-ChrDere05 14928442 14930320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0914 9 96 Receptor kinase-like Gene Family AT3G47570 36.190 5.01e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dere05g0914 Pkinase 7.7e-41 CL0016