Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0913 ATGTACCGACGAGCCACATTCAGTTCCATTATGAGTTCAGGAGTGGCATCTTGCTCGCTCTTCTTTCAACTCGGTTTATCATACTCCATTACCACTGTCGTTCTCTCTGCCAGAGAATCCTACGCCAGCAATGAGGCAGATTCTCATGCTTTGTTGGCCTTCAAGTCAAAGATTCATGACCCTCAAGGAGTTATGAGCTCCTGGAAGGAATCTCTTCATTTCTGCAAGTGGGAAGGAGTTACGTGTGGTCGAAAGCATAGAAGAGTAACCGTACTAGATTTAAGTTCAAGGGGTTTGGTCGGATTCTTATCTCCATCCGTTGGCAACCTCAGCTTCCTTAGGGCAATCTACCTCCAGAATAACACCCTCCATGCATATAACTTTCTTGGGGGAAGTATTCCTGATGAATTGGGTCGATTGAAAAACTTAATGGCTCTGGGACTAGCTGGTAACAACTTGTCTGGTATGATTCCTCCATTCATATACAACCTATCCTCCATTACTATTTTCTCTGTGTCCGATAACCATCTTCATGGCTGTCTTCCAACAAACATAGGGATTTTCTTTCCTCATCTCCAAATGTTTCAAATCGCTAGGAACTTGTTTAGCGGATCAATTCCAGCTTCACTATCCAATGTTTCAAACCTTGAAATTCTTGACAGGGTGACAAATAGATTTTCTGGGGAAGTTTTAGTTGATTTTGGAGGGATGCCTCACCTCTGGAACCTAAATTTGGGGGATAATGTTCTGGGTAATGGAGAACCTGATCAATTGAGTTTTCTTACTTCTTTGGTTAATTGTAGCTATCTGGAAACCATTGCTTTATTTGCAAATGAATTCACAGGGGTGTTGCCTGACTTTATTGCTAATCTCTCCAACAAAGTTGAACGTTTTTCTATATCAGACAATCAGCTATATGGGGCAATTCCTTCGGGGATAGGAAATCTAGCCAATTTGTATGAGTTGCGCATGGATCATAACATGTTCACAGGTTCAATTCCCACAGAGTTTGGGAAGCTTCAAAAGTTACAAGGGATATATCTTAATGACAACAAACTCTCAGGCGAGATTCCTTCTTCTCTTGGAAATCTAACATCTTTAACAGAGAACATTATTCAACTTGATGTGTCAGAGAATAGACTCTCTGGTGAAATTCCAGAAAAATTGATTTCCTGTACTAACCTTCAAAGATTGCAAATGCGAGGTAACTTGTTTGTCAGGTCAGTTCCTCAATCCATTAATTCTTTGAAAGGAATCCAAGTCATTGACATCTCGCGCAACAAGTTGTCTGGGAAAATTCCTAACTTCTTGGAGACTCTTCCTCTGGAATATCTAAATTTATCCTTCAATGATTTTGAGGGTCAAGTATCATCAAAAGGAGTATTTGCAAATGTCAGTGCAATCTCAGTTGTTGGAAATACAAGGCTTTGTGGGGGCATTCCCAAACTTGGTTTGCCCAAATGCTCAAAGCAACACAACATGCATCTTATAGTCAAAATTCTCGTCTCACTTTCCTGTGCCATTATAGGAGCAGCGCTATTGACACGTTCATTGTTGTGGGCCGTCAAAAGGAGAAGAGTCCAAAAATCTTCTGGAGTTGAGCTAAGGAAAGAACTAGTTCAAGTGTCTTATGATGATCTCCTTAAAGCAACCAATGGATTCTCTTCAATGAACTTAATTGGTGAAGGCGCATTTGGTTCTGTCTACAAGGGAATCCTTGACAAAGCATGCGGAGAATTTGTTGCTGTCAAAGTCTTTAAGCTTCAAGATAAGAAAGCAAACAAGAGTTTCGTGGCCGAATGCAAAGCTTTGGCCACTATTCGCCATAGGAACCTCGTAAAGGTCATCACTTGTTGCTCCTCTATTGACTTTCAAGGCAATGATTTCAAAGCTCTTGTTTATCAGTTCATGAGGCTCTCAATCTCAAACGAAAGCAGTTCTGTTGGGGTAAGAGGAACAATTGGGTATGCAGCTCCAGAATACGGGCTTGGAAGCCAAGTATCGACACATGGAGATGTGTACAGTTTTGGGATTGTGCTGTTGGAGATGATGACGGGTAAAAGACCAACTGATGCAATTTTTGAACGGGGCCTAAATCTGCATAGTCATGCCAGTATGGCATTACCAAATCAGGTGATGGCCATTGTGGATCCAATGCTTTTGAATGATGGAACAGAAGATTCAATGAATAACCGGTGGCAACAAATGCAAACTATGAATTATACCAGGAAAGCATGCCTAGAATCTCTAGTGCAAATTGGGGTGGCATGTTCGAGGCCATCACCACAAGCAAGGATGGACATAAAGGATGTCGTAGCTGAGTTGCAAAAGATCAAGGACATGTTCATCAGGCATGGTAGAACTCGGTGA 2370 0.4152 MYRRATFSSIMSSGVASCSLFFQLGLSYSITTVVLSARESYASNEADSHALLAFKSKIHDPQGVMSSWKESLHFCKWEGVTCGRKHRRVTVLDLSSRGLVGFLSPSVGNLSFLRAIYLQNNTLHAYNFLGGSIPDELGRLKNLMALGLAGNNLSGMIPPFIYNLSSITIFSVSDNHLHGCLPTNIGIFFPHLQMFQIARNLFSGSIPASLSNVSNLEILDRVTNRFSGEVLVDFGGMPHLWNLNLGDNVLGNGEPDQLSFLTSLVNCSYLETIALFANEFTGVLPDFIANLSNKVERFSISDNQLYGAIPSGIGNLANLYELRMDHNMFTGSIPTEFGKLQKLQGIYLNDNKLSGEIPSSLGNLTSLTENIIQLDVSENRLSGEIPEKLISCTNLQRLQMRGNLFVRSVPQSINSLKGIQVIDISRNKLSGKIPNFLETLPLEYLNLSFNDFEGQVSSKGVFANVSAISVVGNTRLCGGIPKLGLPKCSKQHNMHLIVKILVSLSCAIIGAALLTRSLLWAVKRRRVQKSSGVELRKELVQVSYDDLLKATNGFSSMNLIGEGAFGSVYKGILDKACGEFVAVKVFKLQDKKANKSFVAECKALATIRHRNLVKVITCCSSIDFQGNDFKALVYQFMRLSISNESSSVGVRGTIGYAAPEYGLGSQVSTHGDVYSFGIVLLEMMTGKRPTDAIFERGLNLHSHASMALPNQVMAIVDPMLLNDGTEDSMNNRWQQMQTMNYTRKACLESLVQIGVACSRPSPQARMDIKDVVAELQKIKDMFIRHGRTR 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0913 789 SUPERFAMILY Protein kinase-like (PK-like) 533 775 IPR011009 -
Dere05g0913 789 Pfam Protein tyrosine and serine/threonine kinase 645 775 IPR001245 GO:0004672|GO:0006468
Dere05g0913 789 SUPERFAMILY RNI-like 123 474 - -
Dere05g0913 789 Gene3D Transferase(Phosphotransferase) domain 1 632 786 - -
Dere05g0913 789 Pfam Leucine rich repeat N-terminal domain 45 82 IPR013210 -
Dere05g0913 789 PANTHER OS04G0122200 PROTEIN 645 780 - -
Dere05g0913 789 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Dere05g0913 789 FunFam LRR receptor-like serine/threonine-protein kinase EFR 525 636 - -
Dere05g0913 789 ProSitePatterns Protein kinases ATP-binding region signature. 560 584 IPR017441 GO:0005524
Dere05g0913 789 Pfam Protein kinase domain 556 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0913 789 Gene3D Ribonuclease Inhibitor 189 492 IPR032675 -
Dere05g0913 789 Gene3D Ribonuclease Inhibitor 43 188 IPR032675 -
Dere05g0913 789 Gene3D Phosphorylase Kinase; domain 1 516 631 - -
Dere05g0913 789 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 262 492 - -
Dere05g0913 789 ProSiteProfiles Protein kinase domain profile. 554 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0913 789 FunFam Nuclear pore complex protein NUP107 44 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0913 Dere-ChrDere05 14922495 14925665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0913 632 788 Receptor kinase-like Gene Family AT3G47570 42.675 3.29e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dere05g0913 PK_Tyr_Ser-Thr 7.8e-07 CL0016