Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0889 ATGCTTTTATGGAGGAATGCGAAGAGCGCACTTGCGCAAACAGCGACGAAAGAAAAGTCTCACCCTCCTATCACTGAGGCAAGAAAGGATAAAAGGGGCAGAGCCTCCTCTCTTTCTTTTTCATTCACTCAATCGAGGTCTTCTCGATTTTCCTCTAAGAACAAAACAAGAGTGCGGAGGAGGCACTCTAATAGTGCTCACACAAGTGAGGACTTTGGCTTGTGCGGTGGTTCGAAACGGAAACTTTCTCTATCAAACAACATGGATAGTGAATTTCAGAAGCAGAATCATGATGTTCTCCCTCACATCTCACTTTTGCTTGAGCTGTCTGCATCTGATGATGTTGAAAGTTTCAGAAGCAAAGTAGAAGAGAAGGGTTTTGATGTGAACGAGGCAAGCTTTTGGTATGGAAGAAGAACTGGATCCAAGAAGATGGGATTGGAAAAGAGGACGCCCCTCATGATTGCATCTTTATTCGGAAGCACGAACGTGCTGAAGTATATTATTGAAACAGGCAGAGTTGATGTGAACAGGGCCTGTGGTTCTGATAGGGCCACTGCTCTCCACTGCGCTGTTGCCGGTGGCTCTGAATCTTCGCATCAGATTGTTAAGCTCTTGCTTGATGCACAGGCAGATCCTGATTGCCTTGATGCTAGTGGAAATAAGCCTGTAAATCTGATTGCTCCTGCCTTTGGTTCTTCATCCATATCACGACGGAAGGCCATGGAGTTGTTGCTGAGAGGTGATGAATTAGGTGGGGAAAGACATCAAATCATCAACCAGGCGGTGGAACAACAGAAAATTTCAGTGCCTTCTTTATCACCAAAAGAATTAGCAGAGAAGAAAGAATATGCTGTTGATATATCATTGCCTGACATAAACAATGGTATATATGGAACAGACGAGTTTAGAATGTACAGTTTCAAGGTGAAGCCGTGTTCAAGGGCATACTCCCATGACTGGACCGAGTGTCCATTTGTTCATCCAGGGGAGAATGCAAGGAGGAGAGACCCACGGAAATACCCTTACAGCTGTGTTCCCTGCCCTGAATTTCGGAAAGGAACCTGCCAGAAGGGGGATGCCTGTGAGTATGCTCATGGTGTTTTCGAGTCATGGCTCCATCCTGCTCAATACCGAACAAGGCTTTGCAAGGAGGAGACTGGTTGCTCGAGGAAAGTTTGCTTCTTCGCTCACAAACGAGAAGAGTTGCGCCCTGTGTATGCTTCCACTGGCTCAGCAATGCCTTCACCAAAATCCTTTTCAGCTAGTGCACTTGACGCAACAGCTATGAGTCCGTTAGCTCTTAGCTCCTCATCTTTACCAATGTCATCTGTTTCAACACCCCCCTTGTCTCCCTTGGCAGCTTCATCTCCCAAGAGTGGAAGCTTGTGGCAGAACAAAATGAACCTCACACCGCCATCCTTGCAGCTCCCAGGTAGCCGACTGAAGTCTTCCTTATGTGCTAGGGATCTTGATCTGGAAATGGAACTGCTTGGGCTAGAAAGTCCTGCAAGCCAGCAGCAGCAGCAATTAATAGAAGAGATTGCTCGAATCTCTTCCCCATCTTTCCGGAACAAAGAATATAGTAGGATAGGTGATTTGAAGCCAACTAACCTTGATGACCTTTTGGGATCTGTTGATCCTTCTGTTCTATCCCAGCTTCATGGACTTTCAGCACAACCTTCAATGCCTACACAGCTGCAATCTCCCAATGGGCTTCAGATGCACCAAAACATGAACCTTCTTCGTGCAAGCTATCCTTCCAACCTCCCTTCCTCGCCCGCAAGAAATCCCTTGGCTTTTGGGTTTGACTCATCAGCTGCCGTGGCTGCAGCAGTAATGAATTCCAGATCTGCAGCCTTCGCAAAGCGAAGCCAAAGTTTTATTGATCGTGGGGCAATGACCCAACATCTTGGGCAATCTTCAGCTTCCAACACCACCTGTAGGGTTTCCTCTGCCCTCTCAGATTGGAGATCCCCTGATGGGAAATTGGACTGGGGCATGAATGGAGATGAGCTGAACAAGCTGAAGAAATCTGCTTCTTTTGGGTTCAGAAACAATGGAAAAACTGACAACTCCATGGCACGATCAGAAAATTTCGAGCCAGATGTCTCGTGGGTTCATTCATTGGTTAAAGATGTTCCCTCTGAGAAGCAGCAGCAGTATGATCTCAGCAGAGATATGCTTTCACCATGGATGGAGCAACTGTACAGAGAACAGGAGCAGATGGTGGCGTAA 2238 0.4683 MLLWRNAKSALAQTATKEKSHPPITEARKDKRGRASSLSFSFTQSRSSRFSSKNKTRVRRRHSNSAHTSEDFGLCGGSKRKLSLSNNMDSEFQKQNHDVLPHISLLLELSASDDVESFRSKVEEKGFDVNEASFWYGRRTGSKKMGLEKRTPLMIASLFGSTNVLKYIIETGRVDVNRACGSDRATALHCAVAGGSESSHQIVKLLLDAQADPDCLDASGNKPVNLIAPAFGSSSISRRKAMELLLRGDELGGERHQIINQAVEQQKISVPSLSPKELAEKKEYAVDISLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDACEYAHGVFESWLHPAQYRTRLCKEETGCSRKVCFFAHKREELRPVYASTGSAMPSPKSFSASALDATAMSPLALSSSSLPMSSVSTPPLSPLAASSPKSGSLWQNKMNLTPPSLQLPGSRLKSSLCARDLDLEMELLGLESPASQQQQQLIEEIARISSPSFRNKEYSRIGDLKPTNLDDLLGSVDPSVLSQLHGLSAQPSMPTQLQSPNGLQMHQNMNLLRASYPSNLPSSPARNPLAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGAMTQHLGQSSASNTTCRVSSALSDWRSPDGKLDWGMNGDELNKLKKSASFGFRNNGKTDNSMARSENFEPDVSWVHSLVKDVPSEKQQQYDLSRDMLSPWMEQLYREQEQMVA 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0889 745 SMART c3hfinal6 377 400 IPR000571 GO:0046872
Dere05g0889 745 SMART c3hfinal6 342 368 IPR000571 GO:0046872
Dere05g0889 745 MobiDBLite consensus disorder prediction 21 35 - -
Dere05g0889 745 FunFam Zinc finger CCCH domain-containing protein 66 300 368 - -
Dere05g0889 745 Gene3D - 78 283 IPR036770 -
Dere05g0889 745 MobiDBLite consensus disorder prediction 36 51 - -
Dere05g0889 745 Gene3D - 343 405 - -
Dere05g0889 745 SMART ANK_2a 148 178 IPR002110 GO:0005515
Dere05g0889 745 SMART ANK_2a 183 215 IPR002110 GO:0005515
Dere05g0889 745 ProSiteProfiles Ankyrin repeat profile. 183 218 IPR002110 GO:0005515
Dere05g0889 745 SUPERFAMILY Ankyrin repeat 102 228 IPR036770 -
Dere05g0889 745 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 347 367 IPR000571 GO:0046872
Dere05g0889 745 ProSiteProfiles Zinc finger C3H1-type profile. 342 369 IPR000571 GO:0046872
Dere05g0889 745 Pfam Ankyrin repeats (3 copies) 143 215 IPR002110 GO:0005515
Dere05g0889 745 PANTHER UNKEMPT FAMILY MEMBER 108 714 IPR045234 -
Dere05g0889 745 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0889 Dere-ChrDere05 14541862 14544913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0889 74 740 C2H2 Transcription Factor Family AT5G12850 37.466 1.88e-137 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere05g0889 Ank_2 8.3e-08 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0889 05 14541862 14544913 Dere05g0889 05 14541862 14544913 ECH