Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0879 ATGGAAAATTTCTACTATTCTAGTTCTTGCTGGAATGGTCCTTCTCCCTCTTCAGTTCAAACCCCATTGTTGCCTCATCAAGTCTCTGAGTCATGCTCTGTTCAGCTGTGTGACTTTCCTAATTCGTGGGCTGCAGAAGACAGAGCTGTCTCTGCCTCCAAGAGCCATAGCCAAGCTGAGAAACGCCGTAGGGACAGGATCAATGCACAGCTTGCTACTCTCAGAAAACTCATCCCCAAGTCTGATAAGATGGACAAGGCAGCATTACTAGGGAGTGTGATAGAGCATGTGAAGGATCTGAAACGAAAAGCCATGGATATAGGCACATCCTTCACAGTTCCAACAGAGATAGATGAAGTATCAATAGACCAAGACCCAGTTCGTCTTCAAGGTGAGAGCTCCAGCTCCAGCACCAGCAACAACATAGTGATCAAAGCTTCTGTTTGCTGCGACGATCGACCAGAGCTGTTCTCTGAACTGATCCAAGTTCTGAAAGGACTGAGGCTGAACGCAGTGAAGGCAGAGATAGCAAGTGTGGGAGGCAGAATCAAAAGCATATTGGTACTGTGTTCCAAGGACAGTGAAGACAATGTTTGCCTCGCCACTCTCAAACAGTCTCTCAAATCAGCTGTTACCAGAATTGCTGCGTCATCATCCATTGCTTCAGCCTGTCCTGCTCGAAGTAAGAGGCAGAGGTTCTTCCTGCCTTCTCATTGCCTAAAGTGA 726 0.4725 MENFYYSSSCWNGPSPSSVQTPLLPHQVSESCSVQLCDFPNSWAAEDRAVSASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIEHVKDLKRKAMDIGTSFTVPTEIDEVSIDQDPVRLQGESSSSSTSNNIVIKASVCCDDRPELFSELIQVLKGLRLNAVKAEIASVGGRIKSILVLCSKDSEDNVCLATLKQSLKSAVTRIAASSSIASACPARSKRQRFFLPSHCLK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0879 241 Pfam Helix-loop-helix DNA-binding domain 54 100 IPR011598 GO:0046983
Dere05g0879 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 103 IPR036638 GO:0046983
Dere05g0879 241 SMART finulus 57 106 IPR011598 GO:0046983
Dere05g0879 241 CDD bHLH_AtAIG1_like 46 125 - -
Dere05g0879 241 CDD ACT_UUR-ACR-like 147 182 - -
Dere05g0879 241 Gene3D - 46 107 IPR036638 GO:0046983
Dere05g0879 241 PANTHER TRANSCRIPTION FACTOR BHLH30 43 237 IPR045847 GO:0003700|GO:0006355
Dere05g0879 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0879 Dere-ChrDere05 14433182 14434429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0879 47 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 48.731 8.06e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere05g0879 HLH 8.3e-12 No_clan