Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0878 ATGGGTGTCACCAACAACGCCGCTTCCGATCGGGTCAAGGGCTCATGGAGCCCCCAAGAGGACGCCACTCTCGTCAAGCTCGTCGAGCAGCACGGTCCGCGCAATTGGTCCCTCATCAGCATCGGCATTCCCGGCCGCTCCGGCAAGTCCTGCAGGCTCCGCTGGTGCAATCAGCTCAGTCCCACCGTCCAGCACCGCCCTTTCACTCCCGCCGAGGACGCCGTCATCGTCCAGGCTCACGCCGTGCACGGCAACAAGTGGGCCACCATTGCCCGCCTCTTGCCCGGACGTACGGACAACTCCATCAAGAACCACTGGAACTCCACCCTGCGCCGCCGACGAGAGGCGGAGATGTCGTCTGCCTCAGGGTCCTCGGAGTCGGAGTCGGTTTTGGTGATGAAGAAGCGGCCGGGGCGGTGCGGTCCCCCGAATGCATCGGACTTATGGGAGTCGGGGAAGCAATTGAAACGGGAGTGCCTCCGGTGGGTTTCACCGGAAAACAAAAGTTGCGAGGATCCAGTGGACGAGAAGGGGTTGATGGGCCTTGTAACTACTTCGCTGAGTTTGTTGCCTCCAGGGGAGAAAGTGGTGTCAGGGGTTAACAAAGTAGAAGAAGAGAATGAGAAGGATGACGGTGAAGATGGAGGTGAAGGTGAAGGGAGAGAGAAGAGGAAAGGGAAGGAAGAGGAGGAGTCGTGCTTACTGAGTATGATGCAGCGCATGATAGCGGCGGAGGTTAGGAATTACATTGATAGTTTGAGGGCCGATGATAGGCTCGTCCTCAGAACTGGACTGGGCCTTCACATTGACCCATCTTCCGTTCATAAGTAA 831 0.5812 MGVTNNAASDRVKGSWSPQEDATLVKLVEQHGPRNWSLISIGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDAVIVQAHAVHGNKWATIARLLPGRTDNSIKNHWNSTLRRRREAEMSSASGSSESESVLVMKKRPGRCGPPNASDLWESGKQLKRECLRWVSPENKSCEDPVDEKGLMGLVTTSLSLLPPGEKVVSGVNKVEEENEKDDGEDGGEGEGREKRKGKEEEESCLLSMMQRMIAAEVRNYIDSLRADDRLVLRTGLGLHIDPSSVHK 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0878 276 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Dere05g0878 276 SMART sant 12 61 IPR001005 -
Dere05g0878 276 SMART sant 64 112 IPR001005 -
Dere05g0878 276 Gene3D - 12 64 - -
Dere05g0878 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 114 IPR017930 -
Dere05g0878 276 CDD SANT 15 57 IPR001005 -
Dere05g0878 276 Gene3D - 67 113 - -
Dere05g0878 276 PANTHER MYB PROTEIN-RELATED 13 129 - -
Dere05g0878 276 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Dere05g0878 276 CDD SANT 67 110 IPR001005 -
Dere05g0878 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Dere05g0878 276 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Dere05g0878 276 MobiDBLite consensus disorder prediction 110 148 - -
Dere05g0878 276 MobiDBLite consensus disorder prediction 193 232 - -
Dere05g0878 276 Pfam Myb-like DNA-binding domain 13 59 IPR001005 -
Dere05g0878 276 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Dere05g0878 276 MobiDBLite consensus disorder prediction 214 232 - -
Dere05g0878 276 FunFam MYB transcription factor 13 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0878 Dere-ChrDere05 14426612 14427442 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0878 9 254 MYB Transcription Factor Family AT5G67300 38.790 3.46e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g0878 Myb_DNA-binding 1.1e-15 CL0123