Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0877 ATGCCATTTCATCGCCGGCGTAGCTTTCCTCCGCCACCAAACATTGCCACCGCCACCGCCGTAGCTATCCACCGTTACCCTGGAATCACCATGTCGAGCCAGCAAGATGCTCAGGTATTCAATTGGCACTATACAGAGCTGGATGACCGGAGCTTCGAAGTCCACAGCCGAAAAGTCTTGTTCATCATCGTCCTTTTCTCTATTATCCTTCTAGTTACTCTTCTGTTCTTCTGCGCTCGATGGATCTGCCGGTACCGTGGCCACGTTCCCACCACCTTCCACTCTAGCCAGGTGCGTCACGCGCCGCCTCTGCCGCCGCAGGGTCTCGACCTTGCTTCGATCAAGAAACTGCCGATAATCTTGCATCAGGTGCCGTCGGATTCCGATTGCGCATTGGAGCTAACAGAGTGCTGTATTTGTCTGAGCGTATTCGAAGATGGCGAGAAATTGAAGGTCCTGCCCGGATGCAATCATTGTTTCCATTGTGCGTGTGTCGATAACTGGCTTATTAATCACTCCAGTTGCCCACTCTGCCGATCTTCTCTCAAAGTTGATTCTTCATTTCCCCAGATTTTGATTCAAGAACCACCAATCAGAATCGACGTTCAATTCTATCTGATTGCTACTTTCTTTGCTTGTGTCTGTGAGCGCATAGATTGCAGCATTACTGGTACCACCCCTTTATGCCTCACCCCCTTTTTTGAGTCAGAAAGCAGAGTAACTCAATTTTACTATAATTTTGCTGTGCTTAAGTATAAACAATTTTGCTGCCGGTGCTGGATAAATTATGCATGGGAATGTTCTTTGCTTGATGAGAAGAAGAAAGCAGTGCAGAGATTAAAGAAGACAATGACGACTGGGGTTCTGAGGCGAGGAAGAGAGAGAGGTTGCGTTCCTGAACACCATGAGAGCAAAGTGGAAGAAGAAGCGTATGAGGAGGCTCAAGAGGAAGCGCAGAAAGATGAGGCAGAGGTCCAAGTAGATTTCTCAGACAGTTGA 999 0.4815 MPFHRRRSFPPPPNIATATAVAIHRYPGITMSSQQDAQVFNWHYTELDDRSFEVHSRKVLFIIVLFSIILLVTLLFFCARWICRYRGHVPTTFHSSQVRHAPPLPPQGLDLASIKKLPIILHQVPSDSDCALELTECCICLSVFEDGEKLKVLPGCNHCFHCACVDNWLINHSSCPLCRSSLKVDSSFPQILIQEPPIRIDVQFYLIATFFACVCERIDCSITGTTPLCLTPFFESESRVTQFYYNFAVLKYKQFCCRCWINYAWECSLLDEKKKAVQRLKKTMTTGVLRRGRERGCVPEHHESKVEEEAYEEAQEEAQKDEAEVQVDFSDS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0877 332 CDD RING-H2_EL5-like 136 179 - -
Dere05g0877 332 SUPERFAMILY RING/U-box 136 186 - -
Dere05g0877 332 Coils Coil 304 324 - -
Dere05g0877 332 MobiDBLite consensus disorder prediction 293 332 - -
Dere05g0877 332 Pfam Ring finger domain 136 179 IPR001841 -
Dere05g0877 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 53 187 - -
Dere05g0877 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 185 IPR013083 -
Dere05g0877 332 MobiDBLite consensus disorder prediction 293 309 - -
Dere05g0877 332 SMART ring_2 137 178 IPR001841 -
Dere05g0877 332 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0877 Dere-ChrDere05 14417241 14422864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0877 33 187 C3H Transcription Factor Family AT3G11110 40.645 3.56e-33 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0877 05 14417241 14422864 Dere05g0877 05 14417241 14422864 CCT