Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0876 ATGGAGGACCCTTCATCCCCAACCTCTAGCCCTCACTCCCCCGAAGCCACCGCCACCACACCCACTCATTCTCACACTCTCACTGCTCGCAAATGCAGAGGCAAAGGTGGTCCCGACAACAAGAAGTTTAGGTACCGCGGGGTCAGGCAGCGAAGCTGGGGCAAATGGGTCGCCGAGATCCGAGAGCCCCGCAAGCGCACCCGAAAGTGGCTCGGCACTTTCGCTACCGCCGAGGACGCTGCCCGCGCCTACGATCGCGCCGCCCTCATCCTCTACGGCTCCAGGGCTCATCTCAACCTCCATTCTTCCCAGTCCTCCTCCTCCTCCTCCTCCTCCTCTTATTCATCATCTCGCGCCTCTAACACTTCCTCTACTCAAACCCTCCGCCCCTTGCTCCCCCGTCCCCCCGCCGGTTCCGGCAGCTTCGTGCCCTACGGCCTTTACAGTACTCACTTGCTTTGCCCTATCAACAACGCAGTACAACTACAGGCACAAGTGCAACATCATCATCCACAGCCGGTGGTGCAAGTGTATCCATCTCCGGAGTCTGATGGTGGTAATTACACTACTGAGGATGCCTCCAGTTCACCAGCAACCTCTTGCCTGAACCATAGTCATCATCTGCATGTGTCGAATCAAGAGCAGCATAGTATGAGTAATTGCATGTTCGATGATCTAAACTCCTTGGTGGTGGGATCAAGCTTGAGTTCTTCCCAGACTATAATTTCGCCGCCGTCGGCCGCTCTGGATCCGCCGGTGCCGGTGGGAGCAGTGAGTGTGGGATCTCCGTCCCTGTGGCCGATGACAAATGAGGAAGAGTACCCGTCTAGTTTATGGGACTATAATGATCCTTTCTTCTTTGATTTCTGA 870 0.5598 MEDPSSPTSSPHSPEATATTPTHSHTLTARKCRGKGGPDNKKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAALILYGSRAHLNLHSSQSSSSSSSSSYSSSRASNTSSTQTLRPLLPRPPAGSGSFVPYGLYSTHLLCPINNAVQLQAQVQHHHPQPVVQVYPSPESDGGNYTTEDASSSPATSCLNHSHHLHVSNQEQHSMSNCMFDDLNSLVVGSSLSSSQTIISPPSAALDPPVPVGAVSVGSPSLWPMTNEEEYPSSLWDYNDPFFFDF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0876 289 Gene3D AP2/ERF domain 43 102 IPR036955 GO:0003700|GO:0006355
Dere05g0876 289 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 28 222 - -
Dere05g0876 289 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Dere05g0876 289 MobiDBLite consensus disorder prediction 1 27 - -
Dere05g0876 289 CDD AP2 44 99 IPR001471 GO:0003700|GO:0006355
Dere05g0876 289 FunFam Ethylene-responsive transcription factor 2 44 102 - -
Dere05g0876 289 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Dere05g0876 289 MobiDBLite consensus disorder prediction 1 43 - -
Dere05g0876 289 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Dere05g0876 289 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Dere05g0876 289 MobiDBLite consensus disorder prediction 101 130 - -
Dere05g0876 289 MobiDBLite consensus disorder prediction 101 135 - -
Dere05g0876 289 MobiDBLite consensus disorder prediction 179 200 - -
Dere05g0876 289 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Dere05g0876 289 MobiDBLite consensus disorder prediction 182 200 - -
Dere05g0876 289 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0876 Dere-ChrDere05 14411416 14412285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0876 30 289 AP2-EREBP Transcription Factor Family AT2G40220 47.667 1.55e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere05g0876 AP2 5.6e-13 CL0081