Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0874 ATGGAAGAGAGCAGCCCATCTGATAAAGACGTTCCCTCCAATCCCAAGCCTCACGCAGATGACGTCACCGCCGGTCACAATGGGCGGTCAAGGCCAATTGCTCCCGATGGGTCCGAATCCGATGCTTGCCTTCCCACACTTACTCCTCTTCTTCGCCGTATCTTTCCATCTTCCTATCCCATACCATCTCGGATGCACCCCATGACACGCGCCACCACGTCTCGGAGCCACCACGGCGTCGCCCGAGAGGACATTTGGAGCGACGGCGCCACCGAGATGTTGATCGACGCCTGGGGTGGCCGTTATGTCCAGCTCAACCGCGGTAACTTCCGTCAGAAGGACTGGATGGAGGTTGCCGACGCCGTGAACGCCCGTCAAAATGGCGTCAAGCCTCCCAAGACCGACGCTCAGTGCAAGAATAGGATCGACACCCTTAAGAAGAAGTACAAGCTTGAGAAGTCAAAGTCCCCTCCGTCCAAGTGGCTCTTTTATCACCGTCTCGATTCTCTGATTGGCGCCAACGCCGTCACCGATAGGAAACCCGCTACAGTCACTTTAACCGTCAAGTCCTCTGAGCCCAGACCCAGCCCCGCCCCGGTTCGTGGGTCCGCTCCGGCTATCTATTCCGTTCGGTCTTCGAGGCCGGATTCCGGTGCTGGGTCCGCGGAGAGTTCACTTGGGGAAGATGGTAGTGATGATTTCGGGTTCGATGGGAGACTACCGAGGAAGAAAAGATTTGAGACGGTTGGCTTTGCAGATGGAGCTGCGTTTAGAGAATTGGCGGGGGCGATTCTCAAGTTTGGGGAAATTTATGAGAGAATCGAGAGCTCGAAGCAGCAGCAGATGATGGAATTAGAGAAGCAGAGAATGGAGTTTACTAAGGATCTCGAATTTCAAAGAATGAATATGTTCATGGACACTCAATTGGAGGTCGAGAGAATGAAGCGATCCAAGTATGCCACTTCCTCAGAACTATCTAATGTGGCAAGCTTCAAGCTCAGCCATGAGTTTGAGGGGAGCGTCCAAGTAAAGCCCATAAAAACATAGGAAGAAGATGTAGTCTATAGGTCATTGAACTTGCCCGGCGTCAGAAGAGCGTGTATTTCGGAAATCTCATCTCTCAATGAATTTGGTGGATCTGGCTAA 1146 0.5271 MEESSPSDKDVPSNPKPHADDVTAGHNGRSRPIAPDGSESDACLPTLTPLLRRIFPSSYPIPSRMHPMTRATTSRSHHGVAREDIWSDGATEMLIDAWGGRYVQLNRGNFRQKDWMEVADAVNARQNGVKPPKTDAQCKNRIDTLKKKYKLEKSKSPPSKWLFYHRLDSLIGANAVTDRKPATVTLTVKSSEPRPSPAPVRGSAPAIYSVRSSRPDSGAGSAESSLGEDGSDDFGFDGRLPRKKRFETVGFADGAAFRELAGAILKFGEIYERIESSKQQQMMELEKQRMEFTKDLEFQRMNMFMDTQLEVERMKRSKYATSSELSNVASFKLSHEFEGSVQVKPIKTXEEDVVYRSLNLPGVRRACISEISSLNEFGGSG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0874 381 Gene3D - 86 151 - -
Dere05g0874 381 MobiDBLite consensus disorder prediction 1 16 - -
Dere05g0874 381 Coils Coil 271 302 - -
Dere05g0874 381 MobiDBLite consensus disorder prediction 1 45 - -
Dere05g0874 381 MobiDBLite consensus disorder prediction 188 237 - -
Dere05g0874 381 Pfam Myb/SANT-like DNA-binding domain 84 170 IPR044822 -
Dere05g0874 381 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 63 318 IPR044823 -
Dere05g0874 381 FunFam trihelix transcription factor ASIL2 86 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0874 Dere-ChrDere05 14380085 14383892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0874 82 311 Trihelix Transcription Factor Family AT1G54060 35.793 2.91e-32 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere05g0874 Myb_DNA-bind_4 5e-23 CL0123