Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0873 ATGAAAGGCATGAAGGTGTTTGAGGCCCGTTCAAGCTCGTCTTGTGCAGCCTGCAAGCTGCTGAAAAGAAGATGCACACCAACCTGTATATTTGCACCTTACTTCCGTTCCGACGAGTGCAAGAAATTCGCCAAGGTCCACAAGGTGTTCGGAGCCAGCAATGTGAGCAAGATCCTCATAGAGGTGCCAGAGGAGCAGAGGGAGGACACGGTGAACTCGCTGGCCTATGAAGCAGAGGCAAGGCTCAAAGACCCTGTTTATGGATGCATTGGAGCCATTTCTCTCTTGCAGAGGAAGATGGTGGAGCTTCAGCATGACTTGGCCATCGCCAAGGCTCGTCTTGCTCGTTATTCTTCTGCTTCTACTGCCGTGGCTACCACCATTACCGTCCCTTCTTCCACTGACAATATCTTCCATACCCATGTGGGTTTGCCTCCTTTCCCTGACTCTTCTTCCTCATGCGGTGATTTCGATCATGGCTTCTCTTCTTTGTCTCAGATTCAATTATTGAGCCGACATGATATGGTGGATGAGTTTTTTCAAATACGACACCACCATCCACGCATTGTGAGGTATGAAAGATCGGTCAAATTTGTGAAATTCATAGTCCTTGAGGTTGAGTCATTGACGATGGACAGAGAGCAGAGGATCGTGGGCATTCGTTGCGATTAG 672 0.4881 MKGMKVFEARSSSSCAACKLLKRRCTPTCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLKDPVYGCIGAISLLQRKMVELQHDLAIAKARLARYSSASTAVATTITVPSSTDNIFHTHVGLPPFPDSSSSCGDFDHGFSSLSQIQLLSRHDMVDEFFQIRHHHPRIVRYERSVKFVKFIVLEVESLTMDREQRIVGIRCD 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0873 223 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Dere05g0873 223 Coils Coil 93 113 - -
Dere05g0873 223 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Dere05g0873 223 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0873 Dere-ChrDere05 14378264 14379202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0873 4 123 AS2 family AT3G11090 75.833 6.59e-63 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere05g0873 LOB 1.3e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0873 05 14378264 14379202 Dere05g0873 05 14378264 14379202 ECH