Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0872 ATGGATAAGTTTTCTTATGTACAAGCTAGAAATGTTTCCTCCATGATAGGGAGGATCAAGCTTCTGTCTTCTTTGTTTGAGGAGATTCAAGAAACAGACAGTCCACTTCCTCCTTCTTCAATGCTGTGTTTCACAGAACTCTTCTCCATCATCAGAAGAGTTAAGCTTTTGATCGAAGAGTGCAAGGAAGGAAGCTCTCTCTGGGGTCTCATACAGTTGGAATCCATTTCCGATCAGTTTTATGTGCTGATAAAGGAGATGGGAAGAGCCCTTGATATTCTGCCTCTGAGCTTGCTCAATATAACAGAAGATATACGAGAACTAGTGGAGCTTCTGCACAAACAGGCGAAGAAGGTTGAGTTGTTCATTGATCCTCGAGAGCTTCAACGAAGAGAACAACTTGTACAACTGATGGCCAACGACAATTTACAAAACCAGAACAATGGCTTCATTGATTTCCGGGAAGCGCAAGAAATGTTAAGCAGCATTTGTCTGAAGAATCCATCAGATTATGATGGGGAAATATCAAAGCTGGAGGCTGAAGCTCAGAATCAGGCAGGCACAGGAGGACTACTCGTTGTGTCCACTATAAACAATCTCATATCTCTGGTTTCGTATTCCAAATCCATGATATTCAGAGATGAAGATAGCTGTAAGCCACGACGTGCATTTATATATAAAACCCCTGATAGTTCTTCGTCTTCTCAGTCAATCACAACTAATATTCCTGATGAATTTCGTTGCCCAATTTCACTTGACCTAATGGGAGACCCAGTGATTGTATCATCTGGGCACACTTACGATCGAATTTCAATAGCACAGTGGATAAACTCTGGGCATCACACTTGCCCCAAAAGTGGGCAAAGGTTGATTCACACTGCTCTAATTCCCAACTACGCATTGAAGAGCCTCGTCCAGCATTGGTGCCGTGAAAACAATATCCCAGTAAATGACCCTGCATCCTCGTTTTCCTCAACCTCCGAGGGAAACAACGGCAAGAACAACTCGAACGAGGATGCTGTTGATCATATTTCTGCAAACAAATCAGCTGTAGATGCTGTCAAAATGACAGCAGAATTTCTTGTTGGAATATTGGCCACAGGGTCAACTGATATCCAAAGGCAGGCTGCATACGAACTTCGGTTACTTGCAAAAACGAGCATGAACAATGGAAGAATTATAGCAGAAGTAGGAGCAATTCCATTTCTAGTGACATTACTAGGTTCCCATGATCCAAGAATCCAGGAACACGCTGTCACGGCCTTGTTTAACCTCTCCATCTTCGACAACAACAAGGGTTTGATCATGGCTGCGGGAGCAGCTGGCAACATAGTAGAAGTGCTTGAATCAGGAAAATCCATGGAGGCAAGAGAAAATGCAGCAGCAACAATCTTCAGCTTATCCATGGCAGATGATTGTAAAGTAACAATTGGAGCTCATCCAAGGGCCATACCTGCTCTAGTCAGACTCTTGAGAGAAGGCACTCCTGTTGGGAAGAGAGATGCTGCCATTTCCCTTTCCAATCTTGCAGTTTACAGTCCCAACAAGGCGAGCATTGTTCATGCTGGAGCAGTTCCTTTGCTGATAAACATGCTGATGGATGACAAAGCTGGGATAACTGATGATGCCTTGGCTGTGCTTGCTTTGCTTCTAGGTTCCTCCGAAGGGCTAGAAGAAATAAGGAATAGCAGAGCACTGGTGCCTCTTCTTATTGATCTTTTGAGATTTGGGTCACCAAAAGGGAAGGAAAATTCAATCACTCTCTTGCTAGGACTGTGCAAGGAAGAAGGTGAGGTGGTAGCGAGACGTCTCTTGGCAAATCCACGAAGTGTTCCTTCTCTTCAGAGCTTGGCTGCTGATGGTTCTTTAAGAGCTCGAAGAAAAGCTGATGCACTGCTTAGACTGCTAAATAGGTGCTGCTCTCAACCTTATTCTGTTTGA 1941 0.4395 MDKFSYVQARNVSSMIGRIKLLSSLFEEIQETDSPLPPSSMLCFTELFSIIRRVKLLIEECKEGSSLWGLIQLESISDQFYVLIKEMGRALDILPLSLLNITEDIRELVELLHKQAKKVELFIDPRELQRREQLVQLMANDNLQNQNNGFIDFREAQEMLSSICLKNPSDYDGEISKLEAEAQNQAGTGGLLVVSTINNLISLVSYSKSMIFRDEDSCKPRRAFIYKTPDSSSSSQSITTNIPDEFRCPISLDLMGDPVIVSSGHTYDRISIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQHWCRENNIPVNDPASSFSSTSEGNNGKNNSNEDAVDHISANKSAVDAVKMTAEFLVGILATGSTDIQRQAAYELRLLAKTSMNNGRIIAEVGAIPFLVTLLGSHDPRIQEHAVTALFNLSIFDNNKGLIMAAGAAGNIVEVLESGKSMEARENAAATIFSLSMADDCKVTIGAHPRAIPALVRLLREGTPVGKRDAAISLSNLAVYSPNKASIVHAGAVPLLINMLMDDKAGITDDALAVLALLLGSSEGLEEIRNSRALVPLLIDLLRFGSPKGKENSITLLLGLCKEEGEVVARRLLANPRSVPSLQSLAADGSLRARRKADALLRLLNRCCSQPYSV 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0872 646 SMART arm_5 512 552 IPR000225 GO:0005515
Dere05g0872 646 SMART arm_5 387 427 IPR000225 GO:0005515
Dere05g0872 646 SMART arm_5 470 511 IPR000225 GO:0005515
Dere05g0872 646 SMART arm_5 553 594 IPR000225 GO:0005515
Dere05g0872 646 SMART arm_5 346 385 IPR000225 GO:0005515
Dere05g0872 646 CDD RING-Ubox_PUB 243 295 IPR045210 -
Dere05g0872 646 Gene3D - 355 476 IPR011989 -
Dere05g0872 646 Pfam Armadillo/beta-catenin-like repeat 513 548 IPR000225 GO:0005515
Dere05g0872 646 Pfam Armadillo/beta-catenin-like repeat 394 426 IPR000225 GO:0005515
Dere05g0872 646 SUPERFAMILY ARM repeat 358 636 IPR016024 -
Dere05g0872 646 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 317 IPR013083 -
Dere05g0872 646 MobiDBLite consensus disorder prediction 319 340 - -
Dere05g0872 646 Pfam U-box domain 242 313 IPR003613 GO:0004842|GO:0016567
Dere05g0872 646 ProSiteProfiles U-box domain profile. 241 315 IPR003613 GO:0004842|GO:0016567
Dere05g0872 646 Gene3D - 477 636 IPR011989 -
Dere05g0872 646 SUPERFAMILY RING/U-box 229 318 - -
Dere05g0872 646 FunFam RING-type E3 ubiquitin transferase 453 640 - -
Dere05g0872 646 FunFam RING-type E3 ubiquitin transferase 241 315 - -
Dere05g0872 646 PANTHER U BOX DOMAIN-CONTAINING 11 641 - -
Dere05g0872 646 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 482 524 IPR000225 GO:0005515
Dere05g0872 646 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 398 440 IPR000225 GO:0005515
Dere05g0872 646 SMART Ubox_2 245 308 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0872 Dere-ChrDere05 14352844 14354784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0872 18 642 U-box Gene Family AT3G46510 38.486 2.27e-121 373