Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere05g0866 | ATGCAAAAGCCGGGTCACGTGATATCACGTGGTCCCACGAGTCCCATTAGCATAACTGAACAACAAGAAGCTGCTGTGGGTCTGGGAGACCCATCCCATGAGCACAGAAAGCGCAAGACAACGACGATGGAGATGGAGAAGCTGGTGGAGGTGTGCGAGCCAGAGATACGAATCGACTTTGCATTGAACTGTAAATGCCGAGCCACGGTGCGTCTCAGATCTCTATCCCACACCTCCCCCGTCGCCTTCAAGGTCCAAACCTCCTCTCCCAACAAGTTCCTCGTCAACCCTCCCTGCGGTCTCATCTCTCCTCTGTCCCACGCCACCTTCCAAGTTATCCTCAAGCCTCAGTCCCGTCTTCCCCCCTCCTACCCTCGCTCGCCCTCCGATCGCTTCCTCATCAAAACCGCCGAGTTCGTCCCCAACTCGCCCGATTCCACTCGCCCTGACTCCATCAATTCCTGGTTCGCCTCTCTGCCTGCCGGCTCCTCCACTCACAACCTCAAACTCAAGGTAGCGTTCGTGGGTCCCGTCCTCCTCCGCGATGCTGTTGCTCGTGGTGATTTAGATGCTGTGAGGAACTTCATCAAACGGCAGAAATCAGTACTTGCGGATTTGACGCCCAATGAAGCCGAGTCACTCCTCCGAGTCGCCACCGAGTTGGTCAACCCGGACGGCATGGTTCACTTGCTGTTGGAAGCTGGATTGAGAGTAGAGGAGCCATTGGGATCGGATAACTTGAACGGCAACGTGGAACCGAGATGGGCTTCAAAGGGCTGGGATGAGTTACACGTGGCGGCTGCTTTTGATCGGTCGGATGAGATTCTGAGATTGTCGACGACGAGGAATCCATCGTCGTCGTTGGATTCCAGAGATCACAAGGGTAGGACCCCTCTGCATTTGGCGGCGGAGAAGGGGAATATGAAGTGCGCGAGCGTGCTGGTGGAAGGCGGTGCCGATATAAATGTGAGGTGTAACGACGGCCGCACGCCGTTGTTCAGAGCTGCGGCGAATGGTGACCGTAGGATGGTGGAGACACTGCTCGAGATGGGCGCTGACCCGACCATAATCGACGATCGTGGCCGTTCATCCCTTTCCATTGCTCGTGAAGAAGGACATAAAGAGGTGGTGGAGATTATGGAGCAAGGAGAAGAAGTAATGGCGGCTGCGAGGCATGGAGATGTGAAGAAACTCGAGGCACTGTTGAAGAGAGGAGCGAGTGTACACTACCGTGATCAGTATGGTCTGACAGCACTTCATGCGGCGGCCATGAAAGGGCACAAAGAGGTGGTATCCATGCTTGTTGAAGCAGGGTTGGACTTGGAATGTGAGGACGAGGAAGGTCACGTGCCGCTGCATATGGCGGTGGAGAGTGGCGACGAAGGGACCGTACATGTTTTAGTGAACAAGGGTGTGAATCTTAATGCTGAGAACCAGAAGGGTGCGACCCCTTTGTACATGGCTAGAATTTTGGGATACGATGGTATAGCTGACTTTCTCGTCAGCAAGGGAGCATTGTCTTGTATTCCTGTAATCCTACGGTAA | 1545 | 0.545 | MQKPGHVISRGPTSPISITEQQEAAVGLGDPSHEHRKRKTTTMEMEKLVEVCEPEIRIDFALNCKCRATVRLRSLSHTSPVAFKVQTSSPNKFLVNPPCGLISPLSHATFQVILKPQSRLPPSYPRSPSDRFLIKTAEFVPNSPDSTRPDSINSWFASLPAGSSTHNLKLKVAFVGPVLLRDAVARGDLDAVRNFIKRQKSVLADLTPNEAESLLRVATELVNPDGMVHLLLEAGLRVEEPLGSDNLNGNVEPRWASKGWDELHVAAAFDRSDEILRLSTTRNPSSSLDSRDHKGRTPLHLAAEKGNMKCASVLVEGGADINVRCNDGRTPLFRAAANGDRRMVETLLEMGADPTIIDDRGRSSLSIAREEGHKEVVEIMEQGEEVMAAARHGDVKKLEALLKRGASVHYRDQYGLTALHAAAMKGHKEVVSMLVEAGLDLECEDEEGHVPLHMAVESGDEGTVHVLVNKGVNLNAENQKGATPLYMARILGYDGIADFLVSKGALSCIPVILR | 514 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere05g0866 | 514 | Pfam | MSP (Major sperm protein) domain | 77 | 142 | IPR000535 | - | |
| Dere05g0866 | 514 | SUPERFAMILY | Ankyrin repeat | 180 | 505 | IPR036770 | - | |
| Dere05g0866 | 514 | Gene3D | - | 384 | 510 | IPR036770 | - | |
| Dere05g0866 | 514 | PRINTS | Ankyrin repeat signature | 295 | 310 | IPR002110 | GO:0005515 | |
| Dere05g0866 | 514 | PRINTS | Ankyrin repeat signature | 343 | 357 | IPR002110 | GO:0005515 | |
| Dere05g0866 | 514 | Pfam | Ankyrin repeats (many copies) | 295 | 348 | IPR002110 | GO:0005515 | |
| Dere05g0866 | 514 | ProSiteProfiles | Ankyrin repeat region circular profile. | 327 | 359 | - | - | |
| Dere05g0866 | 514 | ProSiteProfiles | Ankyrin repeat profile. | 327 | 359 | IPR002110 | GO:0005515 | |
| Dere05g0866 | 514 | ProSiteProfiles | Ankyrin repeat profile. | 414 | 446 | IPR002110 | GO:0005515 | |
| Dere05g0866 | 514 | Pfam | Ankyrin repeats (3 copies) | 387 | 477 | IPR002110 | GO:0005515 | |
| Dere05g0866 | 514 | PANTHER | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN | 389 | 505 | - | - | |
| Dere05g0866 | 514 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Dere05g0866 | 514 | SUPERFAMILY | PapD-like | 36 | 178 | IPR008962 | - | |
| Dere05g0866 | 514 | ProSiteProfiles | Ankyrin repeat region circular profile. | 447 | 478 | - | - | |
| Dere05g0866 | 514 | Gene3D | - | 178 | 383 | IPR036770 | - | |
| Dere05g0866 | 514 | ProSiteProfiles | Ankyrin repeat region circular profile. | 294 | 324 | - | - | |
| Dere05g0866 | 514 | ProSiteProfiles | Ankyrin repeat region circular profile. | 414 | 446 | - | - | |
| Dere05g0866 | 514 | ProSiteProfiles | Major sperm protein (MSP) domain profile. | 42 | 173 | IPR000535 | - | |
| Dere05g0866 | 514 | ProSiteProfiles | Ankyrin repeat profile. | 294 | 326 | IPR002110 | GO:0005515 | |
| Dere05g0866 | 514 | Gene3D | Immunoglobulins | 41 | 177 | IPR013783 | - | |
| Dere05g0866 | 514 | SMART | ANK_2a | 294 | 323 | IPR002110 | GO:0005515 | |
| Dere05g0866 | 514 | SMART | ANK_2a | 447 | 476 | IPR002110 | GO:0005515 | |
| Dere05g0866 | 514 | SMART | ANK_2a | 414 | 443 | IPR002110 | GO:0005515 | |
| Dere05g0866 | 514 | SMART | ANK_2a | 175 | 204 | IPR002110 | GO:0005515 | |
| Dere05g0866 | 514 | SMART | ANK_2a | 381 | 410 | IPR002110 | GO:0005515 | |
| Dere05g0866 | 514 | SMART | ANK_2a | 327 | 356 | IPR002110 | GO:0005515 | |
| Dere05g0866 | 514 | SMART | ANK_2a | 480 | 509 | IPR002110 | GO:0005515 | |
| Dere05g0866 | 514 | ProSiteProfiles | Ankyrin repeat profile. | 447 | 479 | IPR002110 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere05g0866 | 387 | 478 | Ion Channels | AT2G25600 | 40.217 | 2.51e-08 | 54.7 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dere05g0866 | 05 | 14273289 | 14275517 | Dere05g0866 | 05 | 14273289 | 14275517 | ECH |