Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0863 ATGGGTGGGAATTCTCCTTGTGCTTCATGCAAGCTGCTGCGGCGCCGTTGCGCCAAAGACTGCATCTTCGCTCCTTATTTCCCTTCCGATGACCCCCTAAAGTTCGCCATCGTTCACAAGGTTTTCGGAGCCAGCAACGTTGGCAAAATGTTGCAGGAGCTTCCAGTTCACCAGAGAGCTGATGCAGTGAGCAGTTTGGTGTACGAAGCAAATGCAAGAGTTCGAGACCCAGTGTACGGGTGCGTTGGGGCCATATCCTACTTGCAAAGCCAAGTTTCAGAGCTTCAAATGCAGCTTGCTGTGGCTCAAGCAGAGATACTCTGCATCCAGATGCAGCTGGAGCCCGAACCAATGATGCCAAACCCAGGAATTGAAGACCCACACCAGAAACCTTATTTTCTCCAAAACGACCTTCCTCAGTATCTCAATTTTGCATCTTCCAGCAATGTAATGCATGACTCTTTCAAGAGAGAGAGCATCTTCGGACACGACATGGTTTCTTGA 504 0.496 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPLKFAIVHKVFGASNVGKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQSQVSELQMQLAVAQAEILCIQMQLEPEPMMPNPGIEDPHQKPYFLQNDLPQYLNFASSSNVMHDSFKRESIFGHDMVS 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0863 167 Coils Coil 85 105 - -
Dere05g0863 167 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Dere05g0863 167 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Dere05g0863 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0863 Dere-ChrDere05 14252800 14253714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0863 3 115 AS2 family AT2G30130 92.035 6.34e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere05g0863 LOB 1.5e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0863 05 14252800 14253714 Dere05g0863 05 14252800 14253714 ECH