Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0862 ATGAGAACAGCGGAGAGCTGTGAAACCATGGACTCCGACTTTCCCAACAAAGCGTTAACGAGCACGCAGTTTTCTGAGCTGAACCCCCCACTTTCCGAACCTGTTCTCGAAGCACTAGCAGATTCTGGGTTCGAGTTCTGCACGCCGGTTCAAGCCGCCACAATACCTTTGCTATGCAGTTTCAAGGATGTGGCCGTCGATGCTGCCACCGGTTCAGGCAAAACCCTGGCATTTGTCATTCCACTTGTTGAGATTCTGCGCCGGTCCTGTTCCAATCCCAAGCCTCATCAGGTACTTGGAATAATTATTTCTCCCACAAGGGAGCTATCATCCCAAATCTACCATGTTGCCCAACCTTTCATTAAAACTTTAGCTGATATTAAGTCCATGCTCCTCGTTGGTGGAGTAGACGTAAAAGCAGACATGAAGAAGATAGAGGAAGAAGGAGCAAATATATTGATCGGCACACCTGGGCGGCTATATGACATAATGGATCGGATGGATGTATTGGATTTTAAAAACCTTGAGATATTAATTTTAGATGAGGCTGATAGACTCCTGGATATGGGATTCCAGAAGCAAATAAGTTCCATTATATCTCTCTTACCAAAGCTTCGCAGAACTGGTCTTTTCTCTGCTACTCAAACTGAGGCTGTTGGAGAGCTTTCTAAAGCAGGGTTGAGGAACCCTGTGAGGGTTGAAGTTCGGGCTGAATCAAAACCAGTAAATGATCCTGCATTATCACAACAACTAGCCTCTTCAAAGACACCATCAGGACTTCACATTGAGTACTTGGAATGTGAGGCTGATAAGAAACCATCACAGCTTGTAGATATCCTAATAAAGAACCGTTCAAAAAAAATGATAATATATTTTATGACTTGTGCCTGTGTTGACTATTGGGGAGTTGTCCTTCCTCGCCTTTCTGTTCTGAAAGGTTTCTCCTTGATCCCCCTTCATGGAAAGATGAAGCAGACTGCCAGGGAGAAAGCATTGGCTTCATTTACATCTCTTTCAGATGGAATTCTTCTATGTACAGATGTTGCGGCACGTGGACTTGACATTCCAGGTGTTGATTGTATAGTGCAGTATGATCCCCCTCAAGATCCGAATGTTTTCATACATAGAGTTGGTAGAACTGCTCGGCTGGGTAAACAAGGACATGCCGTTGTCTTCTTATTGCCAAAGGAGGAATCCTATGTTGAATTTCTGCATATAAGAAGAGTTCCCCTTCAAGAGAGAAGTTGCTCTGATGATGCAGCGGATGTTGTTCCACAGATTCGTTCTGCTGCAAAAAAAGATCGTGATGTAATGGAGAAAGGACTCAGGGCATTTGTTTCTTATATTCGTGCATATAAAGAGCATCACTGCTCTTATATTTTCAGGTGGAAAGAACTTGAAATTGGTAAGTTGGCCATGGGATATGGCTTACTGCAGCTTCCGTCAATGCCAGAGTTGAAACAGCAGTCACTTTCCACCGAGGGTTTTGTACCTGTTGAAGACATTAATTTGGAGGACATTAAGTACAGGGATAAATCTCGTGAAAAACAAAGGAAGAAAAACTTGCGAGCTAAGAAAGAAGCTAAAGAGAAAGAGGAAAAACCTCAAAAACCCAACAAAACACCAAATGCCGCTATTGTAACAAGGAAGAAAACAGCTCGACAGAGACGTGCTCAGCAGACAGTTGAAGATGAAGATGAGCTGATGCGAGAATACCGTTTGTTGAAAAAATTAAAAAAAGGGACTATAGATGAGAACGAGTACGCTAAGTTAACAGGTACCGAGGAATTACTTTGA 1797 0.4296 MRTAESCETMDSDFPNKALTSTQFSELNPPLSEPVLEALADSGFEFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVIPLVEILRRSCSNPKPHQVLGIIISPTRELSSQIYHVAQPFIKTLADIKSMLLVGGVDVKADMKKIEEEGANILIGTPGRLYDIMDRMDVLDFKNLEILILDEADRLLDMGFQKQISSIISLLPKLRRTGLFSATQTEAVGELSKAGLRNPVRVEVRAESKPVNDPALSQQLASSKTPSGLHIEYLECEADKKPSQLVDILIKNRSKKMIIYFMTCACVDYWGVVLPRLSVLKGFSLIPLHGKMKQTAREKALASFTSLSDGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEESYVEFLHIRRVPLQERSCSDDAADVVPQIRSAAKKDRDVMEKGLRAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSMPELKQQSLSTEGFVPVEDINLEDIKYRDKSREKQRKKNLRAKKEAKEKEEKPQKPNKTPNAAIVTRKKTARQRRAQQTVEDEDELMREYRLLKKLKKGTIDENEYAKLTGTEELL 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0862 598 Gene3D - 263 496 IPR027417 -
Dere05g0862 598 Gene3D - 1 236 IPR027417 -
Dere05g0862 598 Pfam Domain of unknown function (DUF4217) 425 483 IPR025313 -
Dere05g0862 598 CDD SF2_C_DEAD 263 393 - -
Dere05g0862 598 MobiDBLite consensus disorder prediction 513 565 - -
Dere05g0862 598 SMART DUF4217_3 422 485 IPR025313 -
Dere05g0862 598 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 275 431 IPR001650 -
Dere05g0862 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 403 IPR027417 -
Dere05g0862 598 Pfam Helicase conserved C-terminal domain 272 384 IPR001650 -
Dere05g0862 598 CDD DEADc_DDX55 35 233 - -
Dere05g0862 598 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 24 52 IPR014014 GO:0003724
Dere05g0862 598 PANTHER RNA HELICASE 20 526 - -
Dere05g0862 598 SMART helicmild6 299 384 IPR001650 -
Dere05g0862 598 SMART ultradead3 43 243 IPR014001 -
Dere05g0862 598 Coils Coil 512 534 - -
Dere05g0862 598 FunFam RNA helicase 18 236 - -
Dere05g0862 598 Pfam DEAD/DEAH box helicase 48 219 IPR011545 GO:0003676|GO:0005524
Dere05g0862 598 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 55 233 IPR014001 -
Dere05g0862 598 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 179 187 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0862 Dere-ChrDere05 14225930 14230027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0862 31 411 Eukaryotic Initiation Factors Gene Family AT3G13920 29.843 1.14e-44 162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0862 05 14225930 14230027 Dere05g0862 05 14225930 14230027 ECH