Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0859 ATGAGAAATGGAGGGGCAATGGGTTCCAAGGGTGTTGACGAGCCTCTGAAACGTGGACACAGCTATGTTGATATGAAATATGCCAGATGCCACCACCTGTGTAGAGGCTTGCTTGCCATTGATCAGTTCTCGCCTCAAAGTGAAGGGCCGCTAACAGAAGCTTTGAATCAACAAGGATTGAGGAGAGAGAAAGCTAATGATAAAGAAGATGAAGAAGACAACAATGATGATTTAGAGAACAAAGGAAGAATTGAAAGCAACTCTCAGTCTCAGGTGATAACATCTGGTGCTGATAAAGTGATCGGTCGACTTGGTGAGTCTGAAGTTACTTTCCTCAACGGTTTAAGCTGCAAAATTGTATCCAGCCTAAATTTTCTGCAGAAGTTTGTGTCCAAATTTGCTGTGGCTAGTCTCCTACAATCAATGACGCACAGAAAAAGGCATTTACATCAATCAAAGCATCCATTGAAACCTTATCCCTTCGAGGCGTTTCTCTTTGGCTCATGGAAAGCCGTGAAGCGTATAAAAATTGAGGCAGGAACTTTGACCATACATTTTATTAATAACCACAATATGGTTTTGGAGAAAGGCCCTGTTTCAGACATTCGAATAAGGTCAAGGAAAGCTACAAAATCAGATTGTTCCTACTCATTAAGAACTGGAATTGACATATGTGTGCTAGCAGCCTCTCAACAGGATGGTAATTCAAAGGAACTTAGTCCTGAACCTGTGTGGGCTGATGCTAGAATAAGTTCTATACAGAGAAAGCCCCACGAATCTGAGTGCTCGTGTGAATATTTTGTCAACTTCTATGTTAATCAAGGTTGTTTTGATCCAGAGATGAGAACTCTTAATAAGGAGACTAAAGTAGTTGGAATAAATCAAATATCCATCCTCCAGAAGCTTGAACATAATCCTGGTGAAGATCAGCATTACCGGTGGGATTCATCTGAGGACTGCTTTGCAGCACCAAAGACTAAGTTGCTTGCAGGAAAATTTTTATCTGATCTGTCATGGTTAATTGTTGCATCAGTTCTAAAGCAGGTCTCATTCTGTGTAAGATCTGTAGAAAACAAGATTGTGTTTCAAATTTTGGGAGGTGATAATTCTAGCTCTTCATTGAACTCTAATTCTCATGAACATGTTGTAAATTTCAGAGTAGACAATGGAATGTTAGTACCTGTTGTTGCTCAACTTGTTCCATCTGACAACAATAGGGCAGGCCAAGCAGAAGACACACATGACGATGTGGTGTTGCCAGTTTCTAACCGTGAGGGCCTACGACGTTCCAATCGTCGTAATATAGAACCTGAACGATACCTTGGTTATGACGATGTCTCTAAATGGGATTTTGGTTATGTTCGAAGCAGACAACATAAGATAAACGCAAGAAAAGATGATGACAAAGATGAAGTTGGTTTGCTAGATTATTCTCCAGAAGAGGACACTAATGCTTGTCAAAATGGTAATAAGACTAATACCTATGAGGGGGTCCATGCGTACAATAGGAGGGCTGCAACTGGGACAATAAAGTCAGGTGATGTTGATAAAAAAGGACATGAAACCCAACTTGGTATTGATCCTCTGCCTTACGAAGGTGATCCAATAGGCCTTGACCATTCTCAAATAAATGCCAAAATTACTGAAAGTTCTGAGCAAGAAAATTGTATTATTTCCAAGTATAATCATCTGATTCATAGCCCTAATCTGAAGAGGAAGATTATTGATCTATTGACATTTGAACCCTATAATCATTCTTCTAAAACTCCTGATCTGGAAAATTCTGTGGAAGAGATTGATGGAAAATCTTCTGTACGTAATAGCTATGGTACCCGTAGTGTGCATAGGAAAGCTTTATCTGGTCTGGATGACATGGTCACTGAAAGTAGATGGGAAGGGATATACACTAATAAACAAATTATTGGGAAAAAATGTCATTCACCAATTATGATTAGTAAAAGTCTTGAGGAAGAGAGAACTTACAGAAACAGATCCTCAAGTGCTGCAGCCTACAATGAATTGATAGATTTATACTTAAAGAATATTGATACAACACCAACAAAAGAGGAGCCACCTATAACTGACCAGTGGGAAGAATTCAAGGGAACAAACATTTATGGGCAAAAGATGGAAACAGAGGCCAGTGAAGAAGTTTCTGAAATTGCTATATTGTGGAGAGAAATGGAAGTTGCATTGGCATCAAGTTTTGTTCTTGATGACACGGAGGGTTCAAAAGCTGAAGTTGTGGCTGAGACTCTGGAAAATTCTGACAAAATTTGTCAACATGAGTTTAGATTGCACGAAGAGATTGGAATTTACTGCTGTAAATGTGGCTTTGTGAGCACTGAGATAAAAGACATTTCACCACCCTTTCTGCAATACTCGGGGTGGCACCAAGATGAAAAGCAGTGGACTGCTGAATATTTGGAGGCAAAGGCAGATGAAGACGGTGGTTTACGTCTTTTCTTGAGTCATACTTCTGATAAACCTATATCTGAAGAATATAGTAATGTCTGGGAACTGATTCCTGAACTTACAAATAAGTTACATGTCCACCAGAAAAAAGCTTTTGAATTTCTTTGGAAAAATATTGCTGGATCTGTGGAACCAGCACTTATGAATGCTAAATCAGAAAGACAAGGCGGTTGTGTGATATCTCATTCGCCTGGAGCTGGGAAAACTTTTCTAATTATTGCATTTCTGGTTAGCTATTTGAAGTTGTTTCCAGGGAAGAAACCTTTGGTCCTTGCTCCAAAGACAACACTTTATACCTGGTATAAAGAATTTATCAAATGGGAAATTCCAATACCGGTGTATCTGATTCAAGCTCGACGCAGAAGACACTCAGTTCACAAGGAGAAATCATTGGCTTTTCCTGGTGTTCCAAAGCCCCCTGAAGATATCAAGCATGTATTGGACTGTTTAGAAAAAATACAAAAGTGGCATGCGCACCCAAGTGTTCTAGTCATGGGTTATACTTCCTTTTCAATACTGATGCGGGAGAATTCAAAATTTGCGCACAGAAAGTATATGGCCAAAGTTTTAAGAAAAAGTCCAGGGGTCTTGATTCTGGATGAAGGGCACAATCCTAGAAGTACAGAATCAGGTTTGAGGAAAGCTTTGATGAAAGTAGAGACAGAATTGAGAATACTTCTTTCTGGTACACTGTTTCAGAACAATTTTTGTGAATACTTCAACACTCTCTGCTTGGCAAGACCAAAATTTGCTCTTGAAGTGCTGGGTGAGTTAGACCCAAAATACAAGAGGAAAACCAATGGAGCACAAAAATCATGGCATTTAATAGAATCAAGGGCAAGAAAATTCTTCTTAGATAATATTGCCAAAAGAATTGACTCTGATATTAGTGATGAGAGGATACAGGGTCTAAACATGTTAAGAAATATCACAAATGGTTTTATAGATGTTTATGAAGGTGGAAGTTCTGATAGTCTTCCTGGTTTGCATGTTTATACATTGTTAATGAATATGACTGATAGTCAACATCAGATTTTTCAGTCACTCCACAAAAAAATGGCTGAATACAATGGATATCCCCTGGAGATAGAGCTTTTGATAACCCTTGGATCAATACATCCTTGGTTAATCAAAACAGCTGCATGCGCTGATAAGTTTTTAACTGTGCCGCAACTGAGGGAGCTAGAAAAATGCAAGTTTGATTTGAAGATAGGACCAAAAGTACGATTTGTTCTGAGCCTTGTATATCGTGTTGTCAAGGAGGAGAAAACTCTTATCTTTTGCCACAACATTGCACCTGTGAGATTATTTGTAGAACTATTTGAGAAATTCTTTGGATGGCAAAGAGGTCGTGAAGTTTTGGTACTTTCTGGGGAGCTAGAGCTCTTTGAACGGGGGAGAGTGATGGATCAGTTTGAGGAGCTTGGTGGGGCATCAAAGGTACTCCTTGCTTCAATTACAGCTTGTGCTGAAGGCATTAGCTTGACAGCAGCTTCTCGGGTGATTTTGTTGGACTCTGAGTGGAATCCATCAAAGACGAAGCAGGCTATAGCACGTGCATTCCGTCCTGGTCAGCAAAGGGTCGTTTATGTGTATCGCCTATTGGTGACTGGCACACTAGAGGAAGCTAAGTATCACAGAACCACTTGGAAAGAGTGGGTTTCAAGCATGATTTTTAGCGAGGCTTTTGTGGAGGATCCCTCCCGATGGCAAGCGGAAAAGATTGAAGATGACATACTACGGGAGATGATTGAGGAAGACCAGTCTAAAATATTCCATATGATAATGAAAAATGAGAAGCCTTCAACCAATTGA 4290 0.3967 MRNGGAMGSKGVDEPLKRGHSYVDMKYARCHHLCRGLLAIDQFSPQSEGPLTEALNQQGLRREKANDKEDEEDNNDDLENKGRIESNSQSQVITSGADKVIGRLGESEVTFLNGLSCKIVSSLNFLQKFVSKFAVASLLQSMTHRKRHLHQSKHPLKPYPFEAFLFGSWKAVKRIKIEAGTLTIHFINNHNMVLEKGPVSDIRIRSRKATKSDCSYSLRTGIDICVLAASQQDGNSKELSPEPVWADARISSIQRKPHESECSCEYFVNFYVNQGCFDPEMRTLNKETKVVGINQISILQKLEHNPGEDQHYRWDSSEDCFAAPKTKLLAGKFLSDLSWLIVASVLKQVSFCVRSVENKIVFQILGGDNSSSSLNSNSHEHVVNFRVDNGMLVPVVAQLVPSDNNRAGQAEDTHDDVVLPVSNREGLRRSNRRNIEPERYLGYDDVSKWDFGYVRSRQHKINARKDDDKDEVGLLDYSPEEDTNACQNGNKTNTYEGVHAYNRRAATGTIKSGDVDKKGHETQLGIDPLPYEGDPIGLDHSQINAKITESSEQENCIISKYNHLIHSPNLKRKIIDLLTFEPYNHSSKTPDLENSVEEIDGKSSVRNSYGTRSVHRKALSGLDDMVTESRWEGIYTNKQIIGKKCHSPIMISKSLEEERTYRNRSSSAAAYNELIDLYLKNIDTTPTKEEPPITDQWEEFKGTNIYGQKMETEASEEVSEIAILWREMEVALASSFVLDDTEGSKAEVVAETLENSDKICQHEFRLHEEIGIYCCKCGFVSTEIKDISPPFLQYSGWHQDEKQWTAEYLEAKADEDGGLRLFLSHTSDKPISEEYSNVWELIPELTNKLHVHQKKAFEFLWKNIAGSVEPALMNAKSERQGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKKPLVLAPKTTLYTWYKEFIKWEIPIPVYLIQARRRRHSVHKEKSLAFPGVPKPPEDIKHVLDCLEKIQKWHAHPSVLVMGYTSFSILMRENSKFAHRKYMAKVLRKSPGVLILDEGHNPRSTESGLRKALMKVETELRILLSGTLFQNNFCEYFNTLCLARPKFALEVLGELDPKYKRKTNGAQKSWHLIESRARKFFLDNIAKRIDSDISDERIQGLNMLRNITNGFIDVYEGGSSDSLPGLHVYTLLMNMTDSQHQIFQSLHKKMAEYNGYPLEIELLITLGSIHPWLIKTAACADKFLTVPQLRELEKCKFDLKIGPKVRFVLSLVYRVVKEEKTLIFCHNIAPVRLFVELFEKFFGWQRGREVLVLSGELELFERGRVMDQFEELGGASKVLLASITACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQQRVVYVYRLLVTGTLEEAKYHRTTWKEWVSSMIFSEAFVEDPSRWQAEKIEDDILREMIEEDQSKIFHMIMKNEKPSTN 1429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0859 1429 Gene3D - 824 1110 IPR038718 -
Dere05g0859 1429 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1236 1420 IPR001650 -
Dere05g0859 1429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1149 1418 IPR027417 -
Dere05g0859 1429 Pfam Helicase conserved C-terminal domain 1233 1348 IPR001650 -
Dere05g0859 1429 Coils Coil 61 81 - -
Dere05g0859 1429 Pfam SNF2-related domain 845 1177 IPR000330 GO:0005524|GO:0140658
Dere05g0859 1429 CDD DEXHc_ATRX-like 849 1084 - -
Dere05g0859 1429 CDD SF2_C_SNF 1224 1360 - -
Dere05g0859 1429 MobiDBLite consensus disorder prediction 49 91 - -
Dere05g0859 1429 Gene3D - 1152 1429 IPR027417 -
Dere05g0859 1429 SMART helicmild6 1260 1349 IPR001650 -
Dere05g0859 1429 SMART ultradead3 845 1090 IPR014001 -
Dere05g0859 1429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 836 1076 IPR027417 -
Dere05g0859 1429 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 874 1074 IPR014001 -
Dere05g0859 1429 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 195 1427 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0859 Dere-ChrDere05 14181292 14188671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0859 1247 1367 RAD5 or RAD16-like Gene Family AT5G43530 38.843 1.34e-13 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere05g0859 SNF2_N 1.7e-17 CL0023