Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0831 ATGGTTTCTAGAGAGCACAAGAGAGCAGCACTGCATGAGAAGCTGCAACTTCTTCGTTCTATTACTAACTCTCATGCTCTAAACAAAACCTCCATCATAATGGATGCAACGAAGTATATAGAGGAGCTAAAGCAAAAAGTAGAAAGACTGAATCAAGACATGGCCACTGCAGAAACTTCAAATGACCAAAATCATTTGCCTATGGTTACAGTAGAAACCCTAGAGAAGGGATTCCTTATAAATGTTTATTCAGCAAAGAGTTGCCCAGGTCTGCTTGTTCCCATATTGGAGGTCTTTGAAGAGATGGGTCTCAGTGTGACGGAAGCTAGGGTTTCCTGTACAGACACTTTTCGATTTCAGGCAGTTGGAGGCGAAGAAGAAGAAGGAGAGAGTATGGATGCAGAAGCAGTGACAAGAGCAGTGGGAAGAGCCATAAAGAATTGGAGAGAGAGCACTGGTCAACAGTAA 468 0.4295 MVSREHKRAALHEKLQLLRSITNSHALNKTSIIMDATKYIEELKQKVERLNQDMATAETSNDQNHLPMVTVETLEKGFLINVYSAKSCPGLLVPILEVFEEMGLSVTEARVSCTDTFRFQAVGGEEEEGESMDAEAVTRAVGRAIKNWRESTGQQ 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0831 155 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 65 IPR036638 GO:0046983
Dere05g0831 155 Coils Coil 33 60 - -
Dere05g0831 155 Gene3D - 3 75 IPR036638 GO:0046983
Dere05g0831 155 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0831 Dere-ChrDere05 13818608 13819801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0831 11 143 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 29.452 1.69e-09 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0831 05 13818608 13819801 Dere05g0831 05 13818608 13819801 CCT
Dere05g0831 05 13818608 13819801 Dere05g0831 05 13818608 13819801 ECH
Dere12g0081 12 915254 916522 Dere05g0831 05 13818608 13819801 ECH
Dere04g1946 04 22282411 22284078 Dere05g0831 05 13818608 13819801 ECH