Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0822 ATGGGTATTCGCCGAGGAGCAACTTACCTAAACACCAAATTTGGGCGCCAATATTCAGTTAAGAGAGCATCTGGCTATGGAAACGCAAAGCAGGACCAGAGCGTGAAGACGAATAAGAGTTTCATTCTTCCCTTGTATACTGCTAGGACACAGAGAGGGAGAGAAAAAGGAGGAGCCTGTGGAATCAAAGTGGCCTTACTTTCCAGGCTTGATGGTGAGACTAAGAGCCAACCTGTCTATCGTGCAGTAGAAATGATGGTGGTTGGGGAAGCTGAGAGGAGAATAAGGCGACTTGTGCGCGAATTAGCTATAATGATTCCAAATGATATATCAGATATATATGCACTAATTGAAAGTGTTGCTTTTTGGTTCCTTTGTATTATGTTAAGGGAAAATTTTGAAGAGATAGGCAAGAAGATCAAGAGGGAAGGAGATGTTTCATCGCAAATGGGAAGAAGACACATGTTGGGTCCTCCTGGAACCCTAAATACGATAACCCCTTGTGCAGCATGTAAGCTCTTGAGACGAAGATGTGCCCAAGAATGCCCCTTTTCTCCTTATTTTTCCCCTCACGAGCCCCAGAAATTTGCTTCAGTCCACAAAGTCTTCGGTGCTAGCAACGTCTCCAAGATGCTCATGGAGGTACCGGAGAGTCAAAGAGCAGATGCAGCAAATAGTCTAGTGTATGAAGCAAATGTGAGGCTAAGAGACCCAGTGTACGGATGCATGGGTGCAATTTCTGCTTTGCAGCAACAAGTTCAATCCCTACAAGCTGAACTTAATGCGGTAAGGGCTGAAATACTTAAATACAAACTTAGGGAAGCTAATAACATCATACCTTCCTCTCACCATATTCCAGTCCTCCCTAATTCCTCGCGGGCTGTTTCCGTCGCCGCTCCACCACCACCGCCGCCGCCGTCACCACCACCTCCTTCTCTTCTTCCCACTTCTAGTTCCTCTTCTTCCATGTATACCCAAGTCCAACAGAGGCCTCCCACCAGTTATACCACAATTTCAAGTGATCATATTTCCTATTTTGGTTGA 1044 0.4559 MGIRRGATYLNTKFGRQYSVKRASGYGNAKQDQSVKTNKSFILPLYTARTQRGREKGGACGIKVALLSRLDGETKSQPVYRAVEMMVVGEAERRIRRLVRELAIMIPNDISDIYALIESVAFWFLCIMLRENFEEIGKKIKREGDVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRAEILKYKLREANNIIPSSHHIPVLPNSSRAVSVAAPPPPPPPSPPPPSLLPTSSSSSSMYTQVQQRPPTSYTTISSDHISYFG 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0822 347 MobiDBLite consensus disorder prediction 293 347 - -
Dere05g0822 347 MobiDBLite consensus disorder prediction 296 315 - -
Dere05g0822 347 Coils Coil 246 273 - -
Dere05g0822 347 MobiDBLite consensus disorder prediction 316 347 - -
Dere05g0822 347 ProSiteProfiles LOB domain profile. 166 267 IPR004883 -
Dere05g0822 347 Pfam Lateral organ boundaries (LOB) domain 167 264 IPR004883 -
Dere05g0822 347 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 163 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0822 Dere-ChrDere05 13695253 13702445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0822 152 347 AS2 family AT2G40470 72.727 4.48e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere05g0822 LOB 1.3e-40 No_clan