Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0795 ATGGCTCGCCTACTGCTAGACACAGAATCAACTTCGACATCTACCCCAGCAGGTAGTGGAAACAGAACAGGGGGTTCCTACCCAAGTGATGCCAACTTTGACACAAACATGGTGATTATACTAGCAGCCTTGCTCTGTGCACTAATATGTGCTTTAGGGCTAAATTCAATTGTAAGATGTGCTTTAAGATGCAGCAGAAGGTTTGCTTTTGAGACACCAGATGAGGCAGCAGCTCGTTTAGCATCAAAAGGGTTGAAGAAGAGTGCATTGCGTCAGATCCCTATTGCTGTGTATGGTTCATCAGGTACTTCTAATATTGCAGCCACTGAGTGTCCAATTTGCCTAGGAGAGTTTGTGGAGGGGGAGAAAGTGAGGGTGCTTCCTAAATGCAACCATGGCTTCCATGTGAGGTGTATAGACACATGGCTCCTCTCACACTCCTCTTGCCCTACTTGCAGACAGTCTTTGCTTGAACAGACCAGTCCAAACACTTCTGGGAATGTATAG 507 0.4635 MARLLLDTESTSTSTPAGSGNRTGGSYPSDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPDEAAARLASKGLKKSALRQIPIAVYGSSGTSNIAATECPICLGEFVEGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPTCRQSLLEQTSPNTSGNV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0795 168 FunFam RING-H2 finger protein ATL72-like 76 157 - -
Dere05g0795 168 CDD RING-H2_EL5-like 110 153 - -
Dere05g0795 168 MobiDBLite consensus disorder prediction 1 26 - -
Dere05g0795 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 158 IPR013083 -
Dere05g0795 168 Pfam Ring finger domain 110 153 IPR001841 -
Dere05g0795 168 SUPERFAMILY RING/U-box 110 161 - -
Dere05g0795 168 PANTHER RING-H2 FINGER PROTEIN ATL78 24 161 IPR044602 GO:0016567|GO:0016740
Dere05g0795 168 SMART ring_2 111 152 IPR001841 -
Dere05g0795 168 SMART FANCL_C_2 107 160 - -
Dere05g0795 168 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0795 Dere-ChrDere05 13462790 13463296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0795 1 162 C3H Transcription Factor Family AT3G10910 61.404 3.09e-63 191