Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0790 ATGTCGTCGGAAGAAATTGGTCTCGTTCCTGATCAGAGGATCGATAACGGTCTTAATTCACCCCTAGTGTTCCAAGACGACTCCTTGCGTTTCAGCTGCAGTGCCCCACAACGTCGAGTCGGGGACCCGGGTCCGAAAACGAGGGACCTTGGCAGTTTCATCGATGAAAAGATGTTCGCCGTGGAGCGTGACCGTTTTTTCGCGACCCAGGGAGTGGAGTTTCGTCGGAATGTTTATGGGGATTGCTCGGACCGGCGGAACCCACAGGACGCCCGGAATTGGAATGGAAACGGGAGCACTGCAACTCCTAGCGGCGATGAATCGGACGGCGAGGATGATGAAGACGATGAGGAAGATGACGACGACGATGATGTTGAGGGCGACGCTGAAGTAGAAGGACTAGTTGGTGTTGAACATGCGAGCAAAGGAAATTCCAACTCAATGAACGATATTAACGATAACAGCATCAATGGTAGTAACCTGGCTAGTGTTGCCGAAAGAATATCAAACGGGAAAGCTCAACATCATTCGTCTTACGGGTCCAGTAGAGAGGTATTGGGGAAGAATGGAGAAATGGGGCAGATAGTGCATAATAATGCGAGGGGCAACGATGAAGATCATCAGCAAGAAAGGTTAGATAAATCGCAGAACGCGGTCACGATTGCTGAAGCTGACTGTGAGGAGTATTATTCACACTATCTCCAAGGGACGGAGGGGTCAGCTTCTGTGCAGAAAGCTATGCCAGGGGAGAATGGTTGCGGTTTTAGTGGAAGAAAGGACGTTATTTATTCAAGCGAGTCAGGGGAGTCATTAAGGGCAGTTCTTTCAGATCCTGTAACGGGAGCTCTTATGGATGATGCAATGATATTGCCTTGTGGACATTCCTTTGGCGGAGGTGGAATACAGCATGTTATTAGAATGAAAGCTTGTTTCACTTGTTCTCAACCCATATCTGAGGAACCAATATCTCCAAATCTATCACTTCGAGTTGCTGTGCAGGCATACCGTCGGGAAGAGGATTCACAGTTTTACCGGTCATCAAAAAAAAGAAGAGAAAGATTCGATCAGGGTGGTTATGGTGATTCAGCAGTTATGGAACAACCAAGAGGTAGAGGTGTTCAATTTCCATTTGCTGTGATGGACCGGGTCATTATAAAGGGGAACAAGAGGACACCACAGCGTTTTGTTGGACGGGAAGCTATTGTAACAACACAATGCCTGAATGGATGGTACGTGGTAAAGACATTGGACAATGCAGAGAGTGTAAAATTGCAGTATCGTTCGCTTGCTAAGGTTTCAGATGACCCTTCAAAACCTGCCTCCAGCAAGATGGGACCTGATTGGCTTTAA 1350 0.4756 MSSEEIGLVPDQRIDNGLNSPLVFQDDSLRFSCSAPQRRVGDPGPKTRDLGSFIDEKMFAVERDRFFATQGVEFRRNVYGDCSDRRNPQDARNWNGNGSTATPSGDESDGEDDEDDEEDDDDDDVEGDAEVEGLVGVEHASKGNSNSMNDINDNSINGSNLASVAERISNGKAQHHSSYGSSREVLGKNGEMGQIVHNNARGNDEDHQQERLDKSQNAVTIAEADCEEYYSHYLQGTEGSASVQKAMPGENGCGFSGRKDVIYSSESGESLRAVLSDPVTGALMDDAMILPCGHSFGGGGIQHVIRMKACFTCSQPISEEPISPNLSLRVAVQAYRREEDSQFYRSSKKRRERFDQGGYGDSAVMEQPRGRGVQFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDDPSKPASSKMGPDWL 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0790 449 MobiDBLite consensus disorder prediction 89 105 - -
Dere05g0790 449 MobiDBLite consensus disorder prediction 343 357 - -
Dere05g0790 449 MobiDBLite consensus disorder prediction 1 20 - -
Dere05g0790 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 340 IPR013083 -
Dere05g0790 449 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 2 443 - -
Dere05g0790 449 ProSiteProfiles U-box domain profile. 270 342 IPR003613 GO:0004842|GO:0016567
Dere05g0790 449 MobiDBLite consensus disorder prediction 106 127 - -
Dere05g0790 449 MobiDBLite consensus disorder prediction 80 127 - -
Dere05g0790 449 MobiDBLite consensus disorder prediction 343 365 - -
Dere05g0790 449 SUPERFAMILY RING/U-box 269 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0790 Dere-ChrDere05 13412516 13416183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0790 215 449 Plant U-box Gene Family AT5G05230 58.678 5.03e-89 273