Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0789 ATGCGAGCATTTTTGAATATGAGAGCTCTTTCCTACTTGTTCTTGTTGCTTCTTATAGATCCGGTGTTGGTGGTGATTTCTGTGAACCCGTCTCTAAACGACGACGTTCTGGGGCTGATAGTATTCAAAGCTGATATACAAGATCCGAAGGGGAAACTGGTAAGCTGGAACGAAGACGATGAGAATTCCTGTGGTTGGGTCGGTGTGAAATGCAACCCTAGATCCAACAGAGTCGTTGAGCTTAACCTCGATGGGTTCTCGCTTTCGGGTCGGATAGGTCGAGGCCTCCTCCAGTTGCAATTTCTACGCAAGCTTTCTCTCACCAAGAACAATCTCACCGGCAGCATAAGTCCCAACATTGCTAGGCTTGACAACCTTCGAGTCATCGATTTGAGCGAGAATAATCTCTCCGGCGAGCTCCCCGACGATCTTTTCCGACAATGTGGGTCTCTAAGGGCGATTTCATTGGCGAGGAACAAGTTCACAGGGAAAATTCCTTCTAGCTTGAGCTCATGCTCGGCTCTTGCTGCAGTTAACCTCTCGTTTAACCAGTTTTCGGGTTCTCTTCCTTCTGGTATTTGGACTTTGAGTGGACTCAGGTCACTGGATTTGACGGATAATTTGTTAGAAGGGGAGATTCCAAAGGGCATTGAAGGATTGAAAAATTTGCGAACAATCAACCTGGCCAAAAATCAGTTTTCTGGGAAGGTCCCTGACGGGTTTGGAAGTTGCTTGCTTTTGAGGTCTATTGATCTCAGTGAGAACTCTCTTTCTGGTAGCCTTCCAGAGGACATGAAAGAGCTCACATTGTGTAGTTACCTTAGTGTAAGTGGAAATGCTTTTTCAGGTGAGATTCCTGCGTGGGTTGGGGAAATGAAAAGCCTTGAGACATTGGACGTGTCTCTGAATAGATTTTCAGGTAAGGTGCCAAGTTCTGTAGGAAATCTTCAGTCGTTGAAGACAATGAATTTTTCTGCAAATGGTTTTTCTGGTAACCTGCCAGAGTCTATGATAAATTGCACAAGCCTGTTAATCTTGGATGTTAGCCAGAATTCAATGTCAGGTGACCTTCCGTCGTGGATTTTCAAGTCAGATTTGCAGAAGGTTTTAATATCAGAAAATAAATTCCGCGGAAGTCTGAAAAACCCTCTATATTCCTTGGAGGAAGTTGCGGTTCAAAGTCTTCAAGTTTTGGATCTATCTGACAATGGATTTTCTGGTGAAATTACATCTGATATCTCTGTTTTAAGCAGCTTGAAGCTCTTGAATTTATCAAAGAACACTCTAAGTGGTCCTATACCGGCTGCAATTGGAGAATTGAAATCCCTTTATAGTCTTGATTTGAGTGAGAATCAGCTAAACGGAAGCATACCTTTAGAAATAGGAGGAGCTGTATCTTTGAAAGAACTGAGATTGGGAAAAAACTCTCTAGTGGGGAAAATTCCAACCTCAATTGGCAACTGCTCTTCGTTGTCGACTTTGATTCTATCACAGAACAGTCTGAGTGGTTCAATACCTGCAGCAATTGCCAAATTGACTAACTTACAAGAGGTGGACTTATCTTTTAACAACCTTACTGGAAACCTTCCCAAGCAATTGGCCAATCTGCCCAGTCTTCTTTCCTTCAATTTATCTCACAACAACCTCCAGGGTGAACTGCCAGCTGGTCCCTTTTTCAATACTATTTCCCCTTCCTATCTTACTGGCAATCCATCTCTTTGTGGTGCTGCTGTCAAGAAGTCATGCCCTTCTGTCCTTCCAAAGCCAATAGTCCTAAATCCAAACACTACTACTGATTATGCTCCAGGTTCACTACCTCCAAATTTGAGTCACAAAAGAATCATTCTTAGCATTTCTGCACTCATTGCCATTGGTGCGGCTGCTGTCATTGTAATTGGTGTCATTGCCATCAGTGTTCTCAACCTCCGTGTTCGGTCCTCTGCATCTCGAGCTCCAGCTGCCCTCACATTTTCTGCAGGGGAAGAATATAGCCATTCCCCAACTACAGATGCCAACTCTGGCAAGCTTGTTATGTTTTCAGGTGAGCCAGACTTCAGCACTGGAGCACATGCTTTGCTTAATAAGGATTGTGAGCTTGGACGAGGTGGGTTTGGAGCAGTTTACCGAACAGTTCTTAGAGATGGCCATTCAGTTGCAATCAAGAAGCTCACTGTGTCAAGTCTTGTCAAGTCCCAGGAAGATTTTGAAAGGGAAGTGAAGAAACTGGGAAAAGTCAGACACCAAAATCTTGTGGCACTTGAAGGTTACTATTGGACCCCATCGCTACAGCTCCTCATATATGAGTTTGTCTCTGGTGGTAGTCTGTATAAGCATCTCCATGATGGATCAGGCGGAAACTTCCTCTCCTGGAACGATAGGTTTAATATAATTCTTGGGACAGCGAAAGCCTTGGCTCATTTGCATCACATGAACATTATTCACTACAACATTAAGTCGACTAATGTCCTAATTGATGGCTATGGTGAAGCTAAAGTGGGGGACTTTGGCTTAGCAAGATTGTTACCAATGCTTGACCGTTATGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGCTACATGGCACCAGAGTTTGCCTGCCGTACTGTTAAGATAACAGAGAAATGTGATGTATATGGGTTCGGAGTTTTGGTTTTGGAAGTGGTCACAGGGAAGAGGCCGGTTGAATACATGGAGGATGATGTAGTGGTACTTTGTGACATGATCAGAGGAGCTTTGGAAGAAGGCAGGGTGGAGGAATGTATCGATGGGAGACTGCAGGGGAAGTTCCCATCTGAGGAGGCTATACCTGTGATGAAGCTAGGCTTAATATGTACATCACAAGTGCCCTCCAATCGGCCAGACATGGGAGAGGTAGTTAATATATTGGAGCTAATAAGATGTCCCTCAGAAGGACAAGAGGAGCTAGGATGA 2931 0.4411 MRAFLNMRALSYLFLLLLIDPVLVVISVNPSLNDDVLGLIVFKADIQDPKGKLVSWNEDDENSCGWVGVKCNPRSNRVVELNLDGFSLSGRIGRGLLQLQFLRKLSLTKNNLTGSISPNIARLDNLRVIDLSENNLSGELPDDLFRQCGSLRAISLARNKFTGKIPSSLSSCSALAAVNLSFNQFSGSLPSGIWTLSGLRSLDLTDNLLEGEIPKGIEGLKNLRTINLAKNQFSGKVPDGFGSCLLLRSIDLSENSLSGSLPEDMKELTLCSYLSVSGNAFSGEIPAWVGEMKSLETLDVSLNRFSGKVPSSVGNLQSLKTMNFSANGFSGNLPESMINCTSLLILDVSQNSMSGDLPSWIFKSDLQKVLISENKFRGSLKNPLYSLEEVAVQSLQVLDLSDNGFSGEITSDISVLSSLKLLNLSKNTLSGPIPAAIGELKSLYSLDLSENQLNGSIPLEIGGAVSLKELRLGKNSLVGKIPTSIGNCSSLSTLILSQNSLSGSIPAAIAKLTNLQEVDLSFNNLTGNLPKQLANLPSLLSFNLSHNNLQGELPAGPFFNTISPSYLTGNPSLCGAAVKKSCPSVLPKPIVLNPNTTTDYAPGSLPPNLSHKRIILSISALIAIGAAAVIVIGVIAISVLNLRVRSSASRAPAALTFSAGEEYSHSPTTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYRTVLRDGHSVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKHLHDGSGGNFLSWNDRFNIILGTAKALAHLHHMNIIHYNIKSTNVLIDGYGEAKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMIRGALEEGRVEECIDGRLQGKFPSEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELG 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0789 976 Pfam Leucine rich repeat 466 525 IPR001611 GO:0005515
Dere05g0789 976 Pfam Leucine rich repeat 394 453 IPR001611 GO:0005515
Dere05g0789 976 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515
Dere05g0789 976 Pfam Protein tyrosine and serine/threonine kinase 695 961 IPR001245 GO:0004672|GO:0006468
Dere05g0789 976 ProSitePatterns Protein kinases ATP-binding region signature. 699 722 IPR017441 GO:0005524
Dere05g0789 976 PRINTS Leucine-rich repeat signature 247 260 - -
Dere05g0789 976 PRINTS Leucine-rich repeat signature 440 453 - -
Dere05g0789 976 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 312 586 - -
Dere05g0789 976 Gene3D Ribonuclease Inhibitor 191 289 IPR032675 -
Dere05g0789 976 Gene3D Ribonuclease Inhibitor 33 190 IPR032675 -
Dere05g0789 976 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 770 971 - -
Dere05g0789 976 CDD STKc_IRAK 699 965 - -
Dere05g0789 976 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 687 769 - -
Dere05g0789 976 SUPERFAMILY Protein kinase-like (PK-like) 696 966 IPR011009 -
Dere05g0789 976 Gene3D Ribonuclease Inhibitor 295 585 IPR032675 -
Dere05g0789 976 Gene3D Transferase(Phosphotransferase) domain 1 770 974 - -
Dere05g0789 976 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Dere05g0789 976 Gene3D Phosphorylase Kinase; domain 1 686 769 - -
Dere05g0789 976 SMART LRR_typ_2 392 416 IPR003591 -
Dere05g0789 976 SMART LRR_typ_2 123 147 IPR003591 -
Dere05g0789 976 SMART LRR_typ_2 220 244 IPR003591 -
Dere05g0789 976 SMART LRR_typ_2 292 316 IPR003591 -
Dere05g0789 976 SMART LRR_typ_2 440 464 IPR003591 -
Dere05g0789 976 SMART LRR_typ_2 196 219 IPR003591 -
Dere05g0789 976 SMART LRR_typ_2 536 560 IPR003591 -
Dere05g0789 976 SMART LRR_typ_2 512 535 IPR003591 -
Dere05g0789 976 SUPERFAMILY L domain-like 285 612 - -
Dere05g0789 976 ProSiteProfiles Protein kinase domain profile. 693 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0789 976 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 368 458 IPR046959 -
Dere05g0789 976 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 33 311 - -
Dere05g0789 976 SUPERFAMILY L domain-like 50 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0789 Dere-ChrDere05 13382232 13385683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0789 11 976 Receptor kinase-like Gene Family AT3G56370 68.866 0.0 1296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Dere05g0789 PK_Tyr_Ser-Thr 1.8e-41 CL0016