LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g0783	ATGGATGAAAGCATTCATTCTTTGATTCAGAGAGCTTGTGAGTTAGCTAGAAGCCTTGAATCAAACCTACCCAACCTGCAGCCAGATATGGTAGTTAGGCGTATTGATGAGATAGTGGAGACACTCAATGCTGCCAAAGAGAGGCCATTAATGCGACATCATGAGGAAGCTTTGAAGCAGGAAAGCATACAGCAGCCTCAAATGGGTTTGACTTCTTCAATGTTGCAGGAACTGCTAAGCAGGTCTGGTACTTCCAGTTACGCACAATCTGTGAGTAAGTTGATTCAAATGCAGCAACTTCAATCTGCGAGGAGTACGACGCCGTCTAGGGGTGCCCTTCAGATTGGTGAAATGGGAGGGAGAGATGTAGAAGGTTCTGCAGAAGGCGAGGTGGAAGCATCTCCTTGTCGACGCCGAAGAAGGAAAGATGATCCAGAGAAGAGGACATTGATGGTTCCAGCCGTTCAGTTTGGGAACACAGAGATGCCACCAGAGGATGGCTTCACTTGGAGAAAATATGGCCAGAAAGAGATACTTGGCTCCAATTACCCAAGGAGCTATTATAGGTGCACCCACCAGAAATTATATGAATGCCCAGCGAAGAAACAAGTGCAGCGTCTGGATAACAACCCTAACATATTTGCAGTAACATACAGGGGTAATCACACGTGCCATATGTCATCCACAGCTCCATCATCATCAGTTCCTCCACAGCTCCTACCATTAGATATCTCTCAGTCACATGACATCGCCCATGGTAGTACCACTTCCTCACAGTTGTCTCCATCTTCTGCTTCGGTTTCTGGGTGGCTGTCTTCTGTCCACCTCAGCCTCCTCGCCGGCAACAGTGGAAGTGGCGGCGGCATGGCTCCGACAGCTGCAGATGGCGGAGGGGCAGGCCCCTCCACTTCGAGGTTTGGTGCTGATTACCTGGTGGCTGACATGGCTGATGCCATGTTTAATTCGGGTTCTAGTAGTGGTAATAGTATGGAGTCTCTCTTCCCTCCTGCTGAAGATAAATGGAAATCCGGTGACAAGAAGAGCTAA	1047	0.4871	MDESIHSLIQRACELARSLESNLPNLQPDMVVRRIDEIVETLNAAKERPLMRHHEEALKQESIQQPQMGLTSSMLQELLSRSGTSSYAQSVSKLIQMQQLQSARSTTPSRGALQIGEMGGRDVEGSAEGEVEASPCRRRRRKDDPEKRTLMVPAVQFGNTEMPPEDGFTWRKYGQKEILGSNYPRSYYRCTHQKLYECPAKKQVQRLDNNPNIFAVTYRGNHTCHMSSTAPSSSVPPQLLPLDISQSHDIAHGSTTSSQLSPSSASVSGWLSSVHLSLLAGNSGSGGGMAPTAADGGGAGPSTSRFGADYLVADMADAMFNSGSSSGNSMESLFPPAEDKWKSGDKKS	348

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g0783	348	Pfam	WRKY DNA -binding domain	165	224	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere05g0783	348	MobiDBLite	consensus disorder prediction	118	148	-	-
	Dere05g0783	348	Gene3D	WRKY domain	151	227	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere05g0783	348	SMART	WRKY_cls	164	226	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere05g0783	348	MobiDBLite	consensus disorder prediction	321	348	-	-
	Dere05g0783	348	MobiDBLite	consensus disorder prediction	123	148	-	-
	Dere05g0783	348	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	34	260	IPR044810	GO:0003700
	Dere05g0783	348	SUPERFAMILY	WRKY DNA-binding domain	160	226	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere05g0783	348	ProSiteProfiles	WRKY domain profile.	165	227	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g0783	Dere-ChrDere05	13339027	13341260	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere05g0783	3	253	WRKY Transcription Factor Family	AT2G40740	40.909	1.21e-60	195

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Dere05g0783		WRKY	4.6e-27	CL0274