Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0769 ATGATAAATGATGTAGGACCTGCAAGGTGCTACAGGCAAATTAAAAACAAACCATACCCAAAATCACGTTTCTGCCGCGGTGTTCCTGATCCTAAGATCAGAATTTATGATGTTGGAATGAAGAGGAAAGGTGTTGATGAATTCCCTTTCTGCGTCCATCTTGTTAGCTGGGAGAAGGAAAATGTCTCAAGTGAGGCACTGGAAGCTGCTAGGATTGCTTGCAACAAATACATGGCCAAATTTGCTGGAAAGGATGCATTCCACTTGAGAGTCCGGGTACATCCCTTCCATGTTCTTAGGATTAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACAGGGATGAGAGGTGCATTTGGTAAGCCACAGGGAACATGTGCTAGAGTGGCCATTGGTCAGGTCCTTCTTTCTGTCCGCTGCAAGGACAGCAACAGCCATCATGCTCAGGAAGCCCTCCGCCGTGCTAAGTTTAAGTTCCCTGGCCGCCAAAAGATCATCGTTAGCAGGAAATGGGGCTTCACCAAGTTCAGCCGTACTGACTATCTGAAGTACAAATCAGAGAACAGGATTGTGCCAGACGGTGTAAATGCTAAGCTTCTTGGATGTCATGGACCATTGGCTAACCGTCAGCCTGGAAGAGCCTTTCTGCCCGCTGCGACTGCTTAG 672 0.4747 MINDVGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGCHGPLANRQPGRAFLPAATA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0769 223 CDD Ribosomal_L16_L10e 43 168 IPR016180 GO:0003735|GO:0005840|GO:0006412
Dere05g0769 223 Gene3D Ribosomal protein L10e/L16 5 217 IPR036920 GO:0003735|GO:0005840|GO:0006412
Dere05g0769 223 ProSitePatterns Ribosomal protein L10e signature. 110 131 IPR018255 GO:0003735|GO:0005840|GO:0006412
Dere05g0769 223 FunFam 60S ribosomal protein L10 4 208 - -
Dere05g0769 223 PANTHER 60S RIBOSOMAL PROTEIN L10 7 215 IPR001197 GO:0003735|GO:0005840|GO:0006412
Dere05g0769 223 Pfam Ribosomal protein L16p/L10e 14 168 IPR016180 GO:0003735|GO:0005840|GO:0006412
Dere05g0769 223 SUPERFAMILY Ribosomal protein L16p/L10e 7 175 IPR036920 GO:0003735|GO:0005840|GO:0006412
Dere05g0769 223 NCBIfam 50S ribosomal protein L16 7 176 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0769 Dere-ChrDere05 13219311 13220761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0769 7 222 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.037 1.56e-141 393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0769 05 13219311 13220761 Dere04g1334 04 15033441 15038399 CCT