LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g0767	ATGGAAACTTCAGGGCCTAATACTGATGAATACGGCATTTCTTCGCCATCCTCATCTCCCGGAGGAGTAAATACCGCTGACAGTAACAGCAGCGCCAGTACTGTAACGTGGTATGGGGTGCGGTTGCCCTCTATCAGCGCCTTCCGTTCTCCACTCTCTTTTTTTCTGGATTACTCGGGCATTCTCCGTTCAAGCTCGTCAATCCACGACTCTGAGGCTGTGATTGACAACAACGAAGTTGCCGCTTCTGAATTACGCCCTCACCTTCGTATTCCATCATTTGATTCAACTGCTGTAACCGACTGCAGGGGTAGCAGCGACAGTAGTGCAGGGGAAGTTGCGATACGGATTATTGGAGCTGGAGAGCAGGATCACAATGTGGGGTTGGGTTCTGTTTCTTCAGCGTCTCAAAATCAAGTTGGAGATGATGATTTGATGGGAAGTAGAAGTGGAATGCCCGCACTGGATGAGGATGCAGAGGGTAGCAGTGGAATTATGGTTGGTGAGAGAGTTCCTCTGGTGTCTTCATCATCCTCTCTGGCCGGTAGTAGTAGTGGGCAGGTTGATGTCGATGCTGGGAATGGCTTGGAAAGTAACAGTAGGGATTCATCGTCTCACCAGAGGTATGATATTCAGCTGGTTGCAAAATGGATTGAGCAGATTCTTCCTTTCTCGCTGTTGTTGTTGGTTGTGTTTATTCGTCAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATTTCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCTCTAAAGGGAGATAGGAAAGTCTCCATTCTTGTCGGTATCTCTTTTGCCTTCATTCTTCATGTGATATGCATTTACTGGTGGTATCAGAATGATGACCTTTTATACCCACTGATCATGCTTCCTCCAAAAGCAACACCTCGTTTCTGGCATGCAGTATTCATCATTTTGGTTAATGATACACTTGCGCGGCAAGCAGCAATGTCTTTCAAGTGTTTGCTACTTATATATTTCAAAAATGACAGAGGTCACAGCTTCCGTTGGCAGGGTCAAATATTAACTCTGGTTGAATACACACTATTGTTGTATCGTGCCTTGTTGCCAACACCAGTTTGGTACCGGTTTTTCTTAAACAAGGATTATGGAAGTCTCTTTTCATCACTGACCACGGGGTTGTACTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGGTCCAATGCTTTTTTGCTGCCTTAAAAGCATTATCAAGAAAGGATGTTCATTATGGGGTTTACGCTACAAAGGAGCAGGTAAATGCTGCAGGTGACCTATGTGCTATATGCCAGGAAAAGATGCATGCTCCTATCCTGTTGCGCTGTAAACACATTTTCTGTGAAGAGTGTGTGTCAGAATGGTTTGAGAGAGAACGAACTTGTCCGCTATGCAGGGCATTGGTGAAACCTGCTGATATTCGGACCTTCGGGGATGGATCCACAAGTCTGTTTTTCCAGTTATTTTAA	1503	0.4464	METSGPNTDEYGISSPSSSPGGVNTADSNSSASTVTWYGVRLPSISAFRSPLSFFLDYSGILRSSSSIHDSEAVIDNNEVAASELRPHLRIPSFDSTAVTDCRGSSDSSAGEVAIRIIGAGEQDHNVGLGSVSSASQNQVGDDDLMGSRSGMPALDEDAEGSSGIMVGERVPLVSSSSSLAGSSSGQVDVDAGNGLESNSRDSSSHQRYDIQLVAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSILVGISFAFILHVICIYWWYQNDDLLYPLIMLPPKATPRFWHAVFIILVNDTLARQAAMSFKCLLLIYFKNDRGHSFRWQGQILTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFFAALKALSRKDVHYGVYATKEQVNAAGDLCAICQEKMHAPILLRCKHIFCEECVSEWFERERTCPLCRALVKPADIRTFGDGSTSLFFQLF	500

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g0767	500	SMART	ring_2	439	476	IPR001841	-
	Dere05g0767	500	SUPERFAMILY	RING/U-box	432	482	-	-
	Dere05g0767	500	CDD	RING-HC_RNFT1-like	437	477	-	-
	Dere05g0767	500	ProSitePatterns	Zinc finger RING-type signature.	454	463	IPR017907	-
	Dere05g0767	500	MobiDBLite	consensus disorder prediction	128	144	-	-
	Dere05g0767	500	MobiDBLite	consensus disorder prediction	128	161	-	-
	Dere05g0767	500	MobiDBLite	consensus disorder prediction	176	203	-	-
	Dere05g0767	500	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	416	487	IPR013083	-
	Dere05g0767	500	MobiDBLite	consensus disorder prediction	1	28	-	-
	Dere05g0767	500	Pfam	Zinc finger, C3HC4 type (RING finger)	437	480	-	-
	Dere05g0767	500	PANTHER	UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN	28	500	IPR044235	GO:0061630\|GO:1904294
	Dere05g0767	500	ProSiteProfiles	Zinc finger RING-type profile.	439	477	IPR001841	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g0767	Dere-ChrDere05	13205618	13211126	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere05g0767	49	500	C3H Transcription Factor Family	AT5G01960	62.031	0.0	556