Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0752 ATGGCTCGGAGCAGGTCTTTCAGAGTGGTCCAAGTGGAGGACAGAGAAGAGGACTTAGATGATGATGTGCAGAAGAATAAGAGCGTGGCGAAAACGTTGTCTTTCTTTAAATTGTTGAGCTATGCTGATGCAGTAGACTGGACTCTGATGGGGTTGGGAGCACTGGGTTCTGTACTTCATGGCATGGCTTTCCCTGTTGGCTATCTCTTGCTTGGAATGGCTCTTAATGAGTTCGGCAACAATATCAATGACACTGATGCCATGGTTAGAGCTCTCAAAGAAAAGGTTGTTCCCTATGTGTGGTATATGGCCTTCGCCACATTTCCTGCTGGAATACTTGAGATTGGGTGTTGGATGTACACAAGTGAAAGACAGATAGTGAGGCTAAGATTAGACTATTTAAGAGCAGTCCTTAACCAAGAGATCGGAGCTTTTGACACAGAATTAACTAGTGGAAAAATAATCAGTGGAATCAGCAACCACATGAGTATCATACAAGATGCTATTGGTGAGAAGCTGGGTCACTTCACCTCATGCTTCGCAACTTTCTTCTCTGGACTCGTGATTGCTGCCATATGCACTTGGGAAGTGGCACTTCTGTGCTTATTTGTCGTTCCACTAATTCTACTGATAGGGGCCACTTACACCAAGAGAATGAACAGCATATCAGCTGCCAAAACGATTTACCAGTCTGAAGTCACAGCTATGATAGAACAGACAGTATCACATATAAAAACGGTATATGCGTTTGTTGGGGAAAGCTCTGCAATCAAATCCTTCATAGTGAACATGGATAAACTGTATATTATAAGCAAAGGGGAGGCACTTATTAAGGGAGTTGGAACAGGAATGTTCCAAACTGTCAGTTTCTGTTCTTGGGCTCTCATTGTATGGGTTGGAGCTGTTGTTGTCACTGCTAAGAGAGCAAGTGGAGGAGACATTATTACTGCAGTCATGAGCATTCTCTTTGGTGCCATACATTTGACTTATGCTGCACCAGACATGCAAATATTCAATCAGGCCAAAGCGGCAGGATATGAGGTTTTCCAAGTGATAAAAAGAAAGCCACTTATAAGTAACGAATCAGAAGGGAAGACACCTAATAAGATTGAAGGCTTCATTGAAATACGTGATGTTTACTTTTCCTACCCATCACGCCCGGAGAAACCTATCCTTCAAGGGTTTTCGCTGTCAATCCCTGCAGGGAAAACAGTGGCATTAGTTGGTAGCAGTGGGTGTGGAAAGAGTACTGTCATCTCCTTGGTTTCCAGATTTTATGACCCCTCAAAAGGAGAAATTTTCATTGATCACCACAATATCAAGGATCTTGATCTGAAGTTCCTTCGAAGAAACATAGGAGCCGTTTCCCAAGAACCTTCACTGTTTACAGGCACCATCAAGGATAACTTGAAAGTGGGAAAAATGGACGCAGATGATCAAGAGATACAGAATGCAGCAGAAATGTCAAATGCACACTCCTTCATATCACAGTTTCCAGATCATTACCTAACAGAGGTTGGACAGAGGGGCGTCCAATTATCAGGAGGCCAAAAACAAAGGATAGCAATAGCAAGAGCAATTCTAAGAAATCCTCCCATCCTTTTGCTTGATGAGGCTACAAGTGCCCTCGACTCAGAGTCAGAAAAGCTGGTTCAAGAGGCTCTTGAAAAAGCCATGAGGGGAAGAACTGTCATCCTGATTGCACACAGGCTGTCAACTGTGGTAAATGCAGATATGATTGTTGTTGTGCAGAACGGACAAGTTTCAGAGATAGGGACGCATGATATTTTGCTAGAAACAAGCCAATTCTACAGTGCACTATTCAACATGCAGAACCTTGAACCAGTTCCTGACTCAGGAACTTCAAGTTCCAAAAATGAAACTTCAAGTGCCCACAAAGAAGAATCAATTGAAGATACTAGGTCACAGGAGGAACAAGAAGAGATGCTAGAAATTCTCAGGGAGCATTCTAAGAAAGAGGAACAGAATAGCAGAAAAGAAAGAAGTATATTTTTCAGAATCTGGTTTGGTCTAAATAAGAGAGAACTTGCAAAGACTGCTATCGGCGCCTTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCTGTTTTTGGATTCTACATCATCACCATAGGAGTAGCTTACTTCAATGACAATGCAAAGAGGAAAGTGGCATTGTATTCTGTTATCTTCGCAGGAATAGGTTTACTTTCATTATTCAGTCACACCTTGCAGCATTACTTCTTTGGAGTAATTGGAGAAAAGGCCATGGGAAATCTCAGGAGAGCTCTTTATTCAGGTGTGCTTCGCAATGAAGTAGGCTGGTTTGACAAACCTGAGAACAGTGTCGGTTCTCTAACTTCGCGCATCATTAGTGACACAGCCATGGTCAAAATCATAATTGCTGATCGCATGTCAGTGATTGTGCAATGCATTTCTTCCGTACTTATAGCAACGGTGGTCAGCATGAAAGTTAACTGGAGAATGGGTTTAGTAGCTTGGGCTGTAATGCCCTGCCACTTCATAGGTGGTCTGGTTCAAGGCAAGTCTGCCAAAGGATTCTCAGGAGACTACTCTGCTGCACATTCGGAACTTGTTGCTCTTGCATCTGAGTCCACAACTAACATCAGGACTATTGCATCTTTTTGCCATGAAGAGCACGTAATGAGGAAAGCCAAAACATCCTTAGACATCCCAAAGAAAAAGTATAGGATTCACAGTATCAAATATGGGCTAATTCAAGGCTTCTCTCTTTGTCTATGGAACATTGCACATGCTGTAGCTTTGTGGTACACTGCAATTCTGGTCGACAGACGCCAAGCCTCCTTTGAAGATAGCATAAGATCATACCAGATTTTTTCTCTCACTGTTCCTTCTATTACAGAGCTATACACACTGATCCCCGCAGTCATTTCTGCCGTCAATATACTGACCCCAGCATTCCAGACACTTGACCGTAAAACAGAAATTGCACCAGATACCCCAGAAGATACACAGCTCAAGAGCATACAAGGAAATGTTGAATTTCATAAAGTGAAGTTCAACTATCCATTAAGACCTGAGGTGACTGTTCTTGACAATTTCAGTTTAAAAATTACAGCTGGATCAAAGGTGGCATTTGTAGGGCCAAGTGGAGCTGGGAAATCCTCTGTATTGGCCCTTTTACTCAGATTCTATGACCCAAGAGAGGGAAAGGTATTCATTGACGGGAAAGACATAAAAGAGTATAATCTAAGATGGTTAAGGAAACAGATAGGGCTGGTACAACAAGAACCATTGCTTTTTAACTGCTCTATAAGAGAGAACATTTGCTATGGTAACAACGAGGCTTCTGAGAGTGAAATTGTGGAGGTTTCACGGGAAGCAAACATACATGAATTTGTGAGTAATCTACCGAATGGGTATAACACTCTGGTTGGGGAGAAAGGATGCCAGCTTTCAGGAGGGCAAAAGCAGAGAATAGCAATCGCCAGAACCTTACTAAAGAAGCCTGCGATTTTGCTCCTCGATGAAGCAACAAGTGCTCTCGATGCTGAGTCTGAAAGAACAGTTATAATTGCCTTGAAATCAATTAGTCTAAAGGGAAGGACTGGGTTGCATTCAGGAACAACCCAGATCACAATAGCGCATAGGCTTTCCACAGTAATAAACTCAGAGACCATAGTTGTGATGGAGAAAGGCAAAATCGTGGAGATGGGGTCCCACTCAACCTTGATAGAATCAGAGGCAGGGCTTTACTCAAGGCTATTCAGGTTGCAGAGCTTTGAAGAAAGCTGA 3774 0.4271 MARSRSFRVVQVEDREEDLDDDVQKNKSVAKTLSFFKLLSYADAVDWTLMGLGALGSVLHGMAFPVGYLLLGMALNEFGNNINDTDAMVRALKEKVVPYVWYMAFATFPAGILEIGCWMYTSERQIVRLRLDYLRAVLNQEIGAFDTELTSGKIISGISNHMSIIQDAIGEKLGHFTSCFATFFSGLVIAAICTWEVALLCLFVVPLILLIGATYTKRMNSISAAKTIYQSEVTAMIEQTVSHIKTVYAFVGESSAIKSFIVNMDKLYIISKGEALIKGVGTGMFQTVSFCSWALIVWVGAVVVTAKRASGGDIITAVMSILFGAIHLTYAAPDMQIFNQAKAAGYEVFQVIKRKPLISNESEGKTPNKIEGFIEIRDVYFSYPSRPEKPILQGFSLSIPAGKTVALVGSSGCGKSTVISLVSRFYDPSKGEIFIDHHNIKDLDLKFLRRNIGAVSQEPSLFTGTIKDNLKVGKMDADDQEIQNAAEMSNAHSFISQFPDHYLTEVGQRGVQLSGGQKQRIAIARAILRNPPILLLDEATSALDSESEKLVQEALEKAMRGRTVILIAHRLSTVVNADMIVVVQNGQVSEIGTHDILLETSQFYSALFNMQNLEPVPDSGTSSSKNETSSAHKEESIEDTRSQEEQEEMLEILREHSKKEEQNSRKERSIFFRIWFGLNKRELAKTAIGAFAAAFSGISKPVFGFYIITIGVAYFNDNAKRKVALYSVIFAGIGLLSLFSHTLQHYFFGVIGEKAMGNLRRALYSGVLRNEVGWFDKPENSVGSLTSRIISDTAMVKIIIADRMSVIVQCISSVLIATVVSMKVNWRMGLVAWAVMPCHFIGGLVQGKSAKGFSGDYSAAHSELVALASESTTNIRTIASFCHEEHVMRKAKTSLDIPKKKYRIHSIKYGLIQGFSLCLWNIAHAVALWYTAILVDRRQASFEDSIRSYQIFSLTVPSITELYTLIPAVISAVNILTPAFQTLDRKTEIAPDTPEDTQLKSIQGNVEFHKVKFNYPLRPEVTVLDNFSLKITAGSKVAFVGPSGAGKSSVLALLLRFYDPREGKVFIDGKDIKEYNLRWLRKQIGLVQQEPLLFNCSIRENICYGNNEASESEIVEVSREANIHEFVSNLPNGYNTLVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERTVIIALKSISLKGRTGLHSGTTQITIAHRLSTVINSETIVVMEKGKIVEMGSHSTLIESEAGLYSRLFRLQSFEES 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0752 1257 Gene3D - 364 612 IPR027417 -
Dere05g0752 1257 SUPERFAMILY ABC transporter transmembrane region 675 991 IPR036640 GO:0005524|GO:0016020
Dere05g0752 1257 FunFam ABC transporter B family member 4 364 618 - -
Dere05g0752 1257 ProSitePatterns ABC transporters family signature. 1145 1159 IPR017871 GO:0005524|GO:0016887
Dere05g0752 1257 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 971 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere05g0752 1257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1250 IPR003439 GO:0005524
Dere05g0752 1257 SMART AAA_5 1033 1227 IPR003593 GO:0016887
Dere05g0752 1257 SMART AAA_5 401 587 IPR003593 GO:0016887
Dere05g0752 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 997 1252 IPR027417 -
Dere05g0752 1257 MobiDBLite consensus disorder prediction 615 647 - -
Dere05g0752 1257 Gene3D - 996 1256 IPR027417 -
Dere05g0752 1257 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 989 - -
Dere05g0752 1257 CDD ABC_MTABC3_MDL1_MDL2 1006 1252 - -
Dere05g0752 1257 Coils Coil 642 663 - -
Dere05g0752 1257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 374 610 IPR003439 GO:0005524
Dere05g0752 1257 PANTHER ABC TRANSPORTER B FAMILY 15 610 IPR039421 -
Dere05g0752 1257 SUPERFAMILY ABC transporter transmembrane region 37 344 IPR036640 GO:0005524|GO:0016020
Dere05g0752 1257 Pfam ABC transporter 1024 1173 IPR003439 GO:0005524
Dere05g0752 1257 FunFam ABC transporter B family member 4 996 1257 - -
Dere05g0752 1257 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 52 340 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere05g0752 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 611 IPR027417 -
Dere05g0752 1257 Pfam ABC transporter transmembrane region 52 325 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere05g0752 1257 Pfam ABC transporter transmembrane region 688 952 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere05g0752 1257 CDD ABC_MTABC3_MDL1_MDL2 374 611 - -
Dere05g0752 1257 CDD ABC_6TM_Pgp_ABCB1_D1_like 50 348 - -
Dere05g0752 1257 Gene3D ABC transporter type 1, transmembrane domain 37 969 IPR036640 GO:0005524|GO:0016020
Dere05g0752 1257 ProSitePatterns ABC transporters family signature. 513 527 IPR017871 GO:0005524|GO:0016887
Dere05g0752 1257 Pfam ABC transporter 392 541 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0752 Dere-ChrDere05 13049670 13062108 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0752 24 1257 Calmodulin-binding Proteins AT2G36910 41.042 0.0 940