Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0707 ATGGCTAAGAAGCGAAAGCTTCGATCATCTGAACCTGAGCCTGCCAAGGTTGTTGATTCACAACCTGCGCAGCAAGAGCAACCCCAGGAGCAGGAAATCCACGAGGAAGTGAGAATGGAGGAAGAACCGAACCCCGAAGCAACCCTAGAAGAAGAGCATCAGGGACACGAAACTATGGCTGTTGATGATGATAGACCGCAGGGAGATGTGAAATTAGAAGGAAACGCCGATGTTGGAGAACATGTAGAAGATGACGCTGAAGAACAGGATGGCGAGCAACCCGAAACGGCAGAAGCTTCTACCGATGCTCCCCCGTACGAATCAGCTCAGGTTGATGCGAATGGAACCGAGGAAGGTAAAGAGAATGATGACGATGGTGAGGATTTGGACGAAGAAGAGCCTGTGGAGAAGCTTCTTGAGCCCTTTACGAAGGAGCAGCTACACTCTCTCGTCAAGCAAGCTGTGGAAAAATACCCAGATTTTATGGACAACATTCGTCAGCTGGCGGACGTGGACCCTGCTCACCGAAAAATCTTCATTCATGGTCTCGGCTGGGACACCACTGCTGAGACCCTTACTAGTGTGTTTGGGAAGTATGGTGAGATTGAGGATTGCAAGGCCGTCACCGACAAGGTCTCTGGGAAATCAAAAGGCTATGCTTTCATCTTGTTTAAGCACCGAAGTGGAGCTCGTAAGGCGCTGAAGCAGCCCCAGAAGAAGATTGGGAACCGAACTACATCATGTCAATTGGCTTCCGCTGGGCCTGTCCCTTCGCCTGCAGCAACAGCTCCACCGGTGTCTGAATACACTCAAAGGAAGATCTTTGTTAGCAATGTTAGCGCAGAGCTCGATCCCCAAAAGTTACTCGAGTTCTTTAAGCAGTTTGGGGAGGTAGAGGACGGTCCATTGGGTCTTGATAAGCAGACGGGAAAGCCGAAGGGATTCGCACTGTTTGTATACAAGTCAGTAGAGAGTGCTAAGAAGGCTTTGGAAGAGCCGCACAAGAACTTTGAAGGTCATACATTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGAAACAAGGGATATCATCAGCACCAACACCAGCACCATTCTCATCATCACCAGCCTCATTACCAGTCAAGGAAGGAGAAGAATAATGGCTGCACAGGGGTTAAATCCAGCACTTGGGCAGGCATTGACTGCTTTGCTTACTACCCAAGGAGCTGGGCTAGGGCTGGGTAA 1227 0.498 MAKKRKLRSSEPEPAKVVDSQPAQQEQPQEQEIHEEVRMEEEPNPEATLEEEHQGHETMAVDDDRPQGDVKLEGNADVGEHVEDDAEEQDGEQPETAEASTDAPPYESAQVDANGTEEGKENDDDGEDLDEEEPVEKLLEPFTKEQLHSLVKQAVEKYPDFMDNIRQLADVDPAHRKIFIHGLGWDTTAETLTSVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRSGARKALKQPQKKIGNRTTSCQLASAGPVPSPAATAPPVSEYTQRKIFVSNVSAELDPQKLLEFFKQFGEVEDGPLGLDKQTGKPKGFALFVYKSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYHQHQHQHHSHHHQPHYQSRKEKNNGCTGVKSSTWAGIDCFAYYPRSWARAG 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0707 408 MobiDBLite consensus disorder prediction 118 132 - -
Dere05g0707 408 Gene3D - 81 257 IPR012677 -
Dere05g0707 408 MobiDBLite consensus disorder prediction 357 374 - -
Dere05g0707 408 MobiDBLite consensus disorder prediction 351 384 - -
Dere05g0707 408 MobiDBLite consensus disorder prediction 29 79 - -
Dere05g0707 408 MobiDBLite consensus disorder prediction 80 95 - -
Dere05g0707 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 350 IPR000504 GO:0003723
Dere05g0707 408 MobiDBLite consensus disorder prediction 1 132 - -
Dere05g0707 408 SUPERFAMILY RNA-binding domain, RBD 160 255 IPR035979 GO:0003676
Dere05g0707 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 342 IPR000504 GO:0003723
Dere05g0707 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 245 IPR000504 GO:0003723
Dere05g0707 408 SMART rrm1_1 177 249 IPR000504 GO:0003723
Dere05g0707 408 SMART rrm1_1 273 345 IPR000504 GO:0003723
Dere05g0707 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 253 IPR000504 GO:0003723
Dere05g0707 408 SUPERFAMILY RNA-binding domain, RBD 258 370 IPR035979 GO:0003676
Dere05g0707 408 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 90 352 - -
Dere05g0707 408 Gene3D - 258 387 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0707 Dere-ChrDere05 12456231 12457537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0707 268 351 C2H2 Transcription Factor Family AT2G19380 29.762 7.67e-09 55.8