Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0680 ATGGGCATAAGACTGTTACAGACCGAGCTTCTTCCTCTGTTTTGGCACTTGTTTTCATCGGAGACGCCCACCATGGTTGCCGCCAAGAAAACCAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTTGTGATGAAGAGCGGGAAATATACCCTGGGTTACAAAACGGTTCTGAAATCCCTGAGGAACTCTAAAGGCAAATTGGTTATCATTGCCAACAATTGCCCGCCTTTGAGGAAATCAGAGATAGAGTATTATGCTATGCTAGCCAAAGTGGGCGTGCACCATTATAATGGGAACAACGTGGATTTGGGCACAGCTTGTGGCAAGTATTTTAGAGTGTGTTGCCTGAGCATTATTGATCCTGGTGATTCTGATATTATCAAGACAATGCCTGGTGAACACTAG 411 0.455 MGIRLLQTELLPLFWHLFSSETPTMVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRNSKGKLVIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKTMPGEH 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0680 136 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 37 129 IPR004038 -
Dere05g0680 136 Gene3D - 26 132 IPR029064 -
Dere05g0680 136 ProSitePatterns Ribosomal protein L30e signature 2. 104 124 IPR022991 -
Dere05g0680 136 PANTHER RIBOSOMAL PROTEIN L30 25 134 IPR039109 GO:0003723
Dere05g0680 136 FunFam 60S ribosomal protein L30 26 132 - -
Dere05g0680 136 ProSitePatterns Ribosomal protein L30e signature 1. 48 72 IPR022991 -
Dere05g0680 136 SUPERFAMILY L30e-like 37 131 IPR029064 -
Dere05g0680 136 Hamap 50S ribosomal protein L30e [rpl30e]. 36 133 IPR000231 GO:0003723|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0680 Dere-ChrDere05 12044557 12047727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0680 25 136 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 84.821 1.15e-70 206