Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0663 ATGGATAAGCTCACACTAACCCGTCAATTTGGGATCCAATTCGGGATTTTCCTTGGGAGTAAGCGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGTGTTCTAGTGCGTTGTAG 330 0.4333 MDKLTLTRQFGIQFGIFLGSKRDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGCSSAL 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0663 109 SUPERFAMILY Nucleic acid-binding proteins 22 105 IPR012340 -
Dere05g0663 109 Pfam Ribosomal protein S12/S23 21 101 IPR006032 GO:0003735|GO:0005840|GO:0006412
Dere05g0663 109 CDD Ribosomal_S12 30 101 IPR005679 GO:0003735|GO:0006412|GO:0015935
Dere05g0663 109 PRINTS Ribosomal protein S12 signature 68 85 IPR006032 GO:0003735|GO:0005840|GO:0006412
Dere05g0663 109 PRINTS Ribosomal protein S12 signature 85 101 IPR006032 GO:0003735|GO:0005840|GO:0006412
Dere05g0663 109 PRINTS Ribosomal protein S12 signature 49 68 IPR006032 GO:0003735|GO:0005840|GO:0006412
Dere05g0663 109 PRINTS Ribosomal protein S12 signature 18 33 IPR006032 GO:0003735|GO:0005840|GO:0006412
Dere05g0663 109 PRINTS Ribosomal protein S12 signature 33 48 IPR006032 GO:0003735|GO:0005840|GO:0006412
Dere05g0663 109 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 29 106 IPR006032 GO:0003735|GO:0005840|GO:0006412
Dere05g0663 109 NCBIfam 30S ribosomal protein S12 21 106 IPR005679 GO:0003735|GO:0006412|GO:0015935
Dere05g0663 109 ProSitePatterns Ribosomal protein S12 signature. 34 41 IPR006032 GO:0003735|GO:0005840|GO:0006412
Dere05g0663 109 Gene3D - 18 108 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0663 Dere-ChrDere05 11394205 11395180 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0663 31 90 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 44.118 5.11e-09 48.9