Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0643 ATGTGCATTCACCCACCGTGGAACAACCTGGGATTGCCCATGGATTCAACGTGTTTGCGACTTAATTCAAGTGGATTCAATTTCCCTTGGCTATTCTATCTTGGCCTGCATGATCTGAGAAACATTTGCTGTCTAGGCAAACAGTTTGACTCTGCATTTGTTGCAGCAACAATGTCGGATGACATGCTTATGCATTTCTCGTCCAACTCCTCCAACCAATCCGACCAGTCTTTGCCAACTAAGATTGCAAAGCTTGAAGCTCGCATGGTGGGCAAGGCTTCGTCCACAGCTGCCACCGCTCTTCCGTCTGCTCAGCAGTCAACTTGGTCTTCTGTTCCTTCAGCTGTGAAATTCGGGGGAGCTGCCGAGGAGTTGGCTGAACCCTCCACTTCGAGTGATTCCGATGACGATAATGGTGGAGAATTTCTTATACAAGCCAACACACAGAAGCGCCAAAAACTTCAAAAAGATGACAACTCAAAGATTTTTGAACATGTTGAGGTTGTTACTGATGGAAGGCAAACTAATATGGATGCTGTGGAGGCCAAAATTAATGCTGATGTAAATAGGAAAAAAAATGGTCGTGGAAGAGGGAATTCTGGTTCAGGTAGGGGACGTGGTCCTAGAGTTACTGATCAGACCAGAACACCAATTTCTGCTCCAGCAGTTTTGGCTTCCAATGGTCAGCTTGACAATGCATGCCATAAAGAGGGTAGACTCAAAGATCAGTTTCGCAATGACAATTGTGCTTCATTGGAGGAGGAGAATGCTTCTTTACGGGCAAAAGTTGTTGCATTGGAGGAGGACTTGCGTAAATCAAAACAAGAGATTTCTGATTATCAGAATCTTTATCGCCAATTAGAAAAGGAGCTTAAGGACCTGAAAGATCATGAACAGCAAATGAAACCTAAGAGGACAAAAATAATATCTGATTTGCTGATATCAGTTTCGAAGTCTAAGAGGCAAGAAGCAAGGTTGAAAGTACGACAAGACTCATTGAGACTGGGAAATGTTGGTGTGATCAGAGCTGGAACTGTCATATCTGAGACCTGGGAAGATGGCCAAGCATTGAAGGATCTTAATGCCCAACTTAAACAACTGATAGAAACGAAGGAAGCTATTGAGCGGCAGCGGAAATTATTGAAGAAAAAACAATCTGATAAGGGTGATGGAGCAGATGCAGATAGTGGATTACAAGAGGACGATGTTTTCATTCAGGATGAAATTTATAAGTCTCGACTAGCTAGCATTAAACGTGAAGAAGAAGTTATTATGCGGGAGAGGGATCGTTATGAACTAGAAAAGGGAAGACTAATACGTGAGATGAAACGCATTAGAGATGAGGATGGTTCACGTTTTAACAACTTTCAGATCTTAAACCATCGCTATGCCCTTTTAAATCTTCTTGGAAAGGGTGGATTCAGTGAGGTTTACAAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCATGTAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATCCGTCATGCAATTCGGGAGTATAATATCCACAAGACCCTGGTGCATCATCACATTGTTCGTTTATGGGACATCTTTGAGATAGATCAAAATACATTCTGCACCGTTTTAGAGTACTGTAGTGGGAAGGATCTTGATGCTGTCCTTAAAGCAACACCTATATTGCCTGAAAGAGAGGCTAGGGTAATTCTAGTTCAGATTTTTCAAGGCCTTGTTTACTTGAATAAAAGAACACAGAAGATTATTCATTACGATTTAAAGCCTGGAAATGTTTTGTTTGATGAGCTTGGCGTTGCCAAAGTGACTGATTTTGGTCTCAGCAAAATAGTGGAGGATGATGTGGGATCCCAGGGTATGGAACTAACATCCCAGGGAGCTGGAACTTATTGGTATTTGCCTCCTGAATGCTTTGAGCTCAGCAAGACACCTCTTATATCATCTAAGGTTGATGTCTGGTCTGCTGGTATTTTGTTCTATCAAATGCTCTTCGGTAGACGTCCTTTCGGGCATGATCAAACCCAAGAGCGCATACTTCGTGAAGACACAATTATTAAGGCTCGCAAGGTTGAATTTCCTTCTAGACCTACTGTCTCTAATGAGGCAAAGGATTTTATACGGCGATGTCTAACATATAACCAGGCAGAGAGACCAGATGTTTTGACCATTTCTCAAGATCCATATCTTACATACTCAAAGAAGTGA 2226 0.4209 MCIHPPWNNLGLPMDSTCLRLNSSGFNFPWLFYLGLHDLRNICCLGKQFDSAFVAATMSDDMLMHFSSNSSNQSDQSLPTKIAKLEARMVGKASSTAATALPSAQQSTWSSVPSAVKFGGAAEELAEPSTSSDSDDDNGGEFLIQANTQKRQKLQKDDNSKIFEHVEVVTDGRQTNMDAVEAKINADVNRKKNGRGRGNSGSGRGRGPRVTDQTRTPISAPAVLASNGQLDNACHKEGRLKDQFRNDNCASLEEENASLRAKVVALEEDLRKSKQEISDYQNLYRQLEKELKDLKDHEQQMKPKRTKIISDLLISVSKSKRQEARLKVRQDSLRLGNVGVIRAGTVISETWEDGQALKDLNAQLKQLIETKEAIERQRKLLKKKQSDKGDGADADSGLQEDDVFIQDEIYKSRLASIKREEEVIMRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHHHIVRLWDIFEIDQNTFCTVLEYCSGKDLDAVLKATPILPEREARVILVQIFQGLVYLNKRTQKIIHYDLKPGNVLFDELGVAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGILFYQMLFGRRPFGHDQTQERILREDTIIKARKVEFPSRPTVSNEAKDFIRRCLTYNQAERPDVLTISQDPYLTYSKK 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0643 741 ProSitePatterns Serine/Threonine protein kinases active-site signature. 589 601 IPR008271 GO:0004672|GO:0006468
Dere05g0643 741 Coils Coil 249 300 - -
Dere05g0643 741 ProSiteProfiles Protein kinase domain profile. 463 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0643 741 Coils Coil 414 448 - -
Dere05g0643 741 ProSitePatterns Protein kinases ATP-binding region signature. 469 492 IPR017441 GO:0005524
Dere05g0643 741 PANTHER MIXED LINEAGE PROTEIN KINASE 58 740 - -
Dere05g0643 741 Gene3D Transferase(Phosphotransferase) domain 1 454 741 - -
Dere05g0643 741 CDD STKc_TLK 462 735 - -
Dere05g0643 741 Pfam Protein kinase domain 464 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0643 741 Coils Coil 357 387 - -
Dere05g0643 741 MobiDBLite consensus disorder prediction 183 214 - -
Dere05g0643 741 SUPERFAMILY Protein kinase-like (PK-like) 455 737 IPR011009 -
Dere05g0643 741 SMART serkin_6 463 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0643 741 FunFam Serine/threonine-protein kinase TOUSLED 454 741 - -
Dere05g0643 741 MobiDBLite consensus disorder prediction 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0643 Dere-ChrDere05 10672507 10686194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0643 446 741 MAP Kinase Kinase Kinase AT3G13530 27.759 5.88e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Dere05g0643 Pkinase 8.2e-60 CL0016