Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0623 ATGTCCACCACGAAGCGCAACAATTCCTGGACCACCGACTCTGACCTCGACGGCATCGACCTCGACCCCTCCGATTTCGGCTCCTCCATCCCCCTCAAGAAGGTCCCAAACGGCGACGTATTCGCCGCCTCCCGTGCCGGCGACGTTGAACGCATCCGCTACCTCCTTGAGTCCGGAGTGAACGTTAATGCCCGGGACCAGTGGGATTCAGGGGCTCTGTACTATGCTTGCCTCGCCGGTCACCTGGATGCTGCACGCATGTTGCTTGAGAGTGGTGCTATCTGCTCCGAGCACACGTTCGACGGGGACCGCTGCCATTACGCCGCCCTCAATTTGAAGGTCAGGAAGTTGTTGAAGGCCTTCGAGGCCAGACCGCCGCCTCTGGGTCCCTTGCAGGCGGCGCTGAGGGACACTTTTTTGGGTTGTGCGGCTAATAGGGCCTACTTGGAACTGGCTGATCCTCACTTCCAAATTTCGGGTATCTCATCGACTCAGGGATCCAATTGCAACCACTTTCCTCCGGATGTGGTTTTTTTTGTAGCAGGAAGACCTATTGAAGCTCACAGAGTTATATTAAGTGCAAGGTCACCATTTTTCAAGAAAAAGTTTGAGAGTGATTGGAAAGAGCGCAGGGAAGTAAGATTCTCCAAGGAGAAGTTGTCCTATCCTGCTCTCTATAGCCTTGTACACTTCTTTTATTCTGACAGATTAGAGATTGCAGTAGATGACATGGAAGATCTTGTGAGAATCTGTAAAGTATGCAAATGTGAATCACTACAGAGAATTCTTGAGAAAGAACTAATTCATCAAAAATATGCAGAGTATAAAGCACTGAGAGATGTGGACAATTCTCAGAAACGGTTTATTTTACAGGGTTTATCCCTTCCTGAGGAAGACAGGCTGCCTGCAGCCTTGCATAAAATTCTGCAGATTGCCCTTTCAAATTTGATTCAAGAAAATGATCTAGATGGTGGAATTGATAAATTGGTATTTAGAGTGGCTGCAATGCAGGTTGCTAATTCTATCAATGATCTTGCAGATGTTTGTGTGAGAGTTGATAAAAAAGTTTTTCGCTGCCATCAAGTTATTTTAGCATCAAGGTCTGAATACTTCAAAGCAAGATTGTCACGTATAAAGGACTTCCACGAAGGGAAAGATGAGTTATCTGTTGACTCCCTTCCTTGTCTTGAAGAACATGATTTGAGCAAGGAAGCATTTGAGAAAATGATTGAGTATATGTACACAGATGGTTTGAAGGATATTGATCCGGATCAGGCGGAAGAAATGTTTGATGCTGCTTCTAGATACTTACTTTTTCCTCTTAAGCGTGCAGTGGCTGATGCATTGCTGCCACACCTAGAAATGGTTTCACCAGCAGAACTTTGCCATTGGTTGATATTGGCAGACATGTATGGTGTTTTGAAGATACGGGAATATTGTCTAGACACTATAGCTTGTAATTTTGAAACATTTGCTGATACTAAAGAATTCCGAGCAATATTATTGACACTGCCGCCACCATCTGGAGATTCCTCTCTCCGTACCACCGCTCCGCGTGTTCCTGGAGCTGTTCTCAGTATTGATCAAGGCAATCTTCTTGATGATTTACGAGAGAAATGGCTTGAAGTTGAAGCTGCTGAGCTTGATCAGAGAGACGAGAGCGCATTACAGTTTGACAAGCGCCTGGAGATGCTCATGCTTGTTGCAGAGCAAGAAAAATTAGCCAATTCTGATTCAGATGATGTCAATAACATGGCATCCTTGGTTCTCTCTGCAACCTCTACTCTAGTTTCAGCTGAACAAGAGGAACTGTAG 1815 0.4551 MSTTKRNNSWTTDSDLDGIDLDPSDFGSSIPLKKVPNGDVFAASRAGDVERIRYLLESGVNVNARDQWDSGALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQAALRDTFLGCAANRAYLELADPHFQISGISSTQGSNCNHFPPDVVFFVAGRPIEAHRVILSARSPFFKKKFESDWKERREVRFSKEKLSYPALYSLVHFFYSDRLEIAVDDMEDLVRICKVCKCESLQRILEKELIHQKYAEYKALRDVDNSQKRFILQGLSLPEEDRLPAALHKILQIALSNLIQENDLDGGIDKLVFRVAAMQVANSINDLADVCVRVDKKVFRCHQVILASRSEYFKARLSRIKDFHEGKDELSVDSLPCLEEHDLSKEAFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADALLPHLEMVSPAELCHWLILADMYGVLKIREYCLDTIACNFETFADTKEFRAILLTLPPPSGDSSLRTTAPRVPGAVLSIDQGNLLDDLREKWLEVEAAELDQRDESALQFDKRLEMLMLVAEQEKLANSDSDDVNNMASLVLSATSTLVSAEQEEL 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0623 604 Pfam BTB/POZ domain 344 449 IPR000210 GO:0005515
Dere05g0623 604 Pfam BTB/POZ domain 170 270 IPR000210 GO:0005515
Dere05g0623 604 Gene3D Potassium Channel Kv1.1; Chain A 339 495 IPR011333 -
Dere05g0623 604 Coils Coil 596 604 - -
Dere05g0623 604 FunFam BTB/POZ domain-containing protein 168 290 - -
Dere05g0623 604 Pfam Ankyrin repeats (many copies) 41 89 IPR002110 GO:0005515
Dere05g0623 604 Gene3D Potassium Channel Kv1.1; Chain A 170 289 IPR011333 -
Dere05g0623 604 SUPERFAMILY POZ domain 168 269 IPR011333 -
Dere05g0623 604 Gene3D - 31 169 IPR036770 -
Dere05g0623 604 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 11 569 IPR044515 -
Dere05g0623 604 ProSiteProfiles BTB domain profile. 346 422 IPR000210 GO:0005515
Dere05g0623 604 ProSiteProfiles BTB domain profile. 174 241 IPR000210 GO:0005515
Dere05g0623 604 FunFam BTB/POZ domain-containing protein 34 157 - -
Dere05g0623 604 ProSiteProfiles Ankyrin repeat profile. 43 67 IPR002110 GO:0005515
Dere05g0623 604 CDD BTB_POZ_ZBTB_KLHL-like 345 436 - -
Dere05g0623 604 CDD BACK 462 497 - -
Dere05g0623 604 SMART BTB_4 346 453 IPR000210 GO:0005515
Dere05g0623 604 SMART BTB_4 174 271 IPR000210 GO:0005515
Dere05g0623 604 SUPERFAMILY POZ domain 343 452 IPR011333 -
Dere05g0623 604 SUPERFAMILY Ankyrin repeat 42 119 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0623 5 126 MAP Kinase Kinase Kinase AT2G31800 35.294 7.92e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dere05g0623 BTB 3.6e-14 CL0033