Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0559 ATGAAAGACTCTACTGCGCCCGCCCATTCCGTCTCCGCTGGTTTCCACTTCCGAGGGGCTGACGTCGAACTTGCGCGACACCTGAAAGTTACAGAGATGCAGACAACCGCAGCTGACGTAGAGGCAGTGGACTTCGAGCCGGAGGACGATGACTTGATGGACGATGACGGCGGAGCCGACTCTCCTCGGGCTCCTCCCCTTCCTAAGCTCAAATCTGCCATCACTGGCGGCGGCGCATCTTCCTCACTCTCCGGCCCTAAGAAGACCAAAGGCCGAGGATTTCGTCATAATTCCGATGCCGACCGCAACACTCGCCTTACTGCCTCCAACTTCGAATCTCTTACTACCGAGGGTGGCCCCGGTCCTCAACGATCAATTGAAGGATGGATTATTTTGGTCACTGGGGTGCATGAGGAAGCACAAGAGGATGACTTGCAAAATGCATTTGGTGAATATGGAGAGATTAAGAATCTGCATTTGAATCTTGATCGTCGAACTGGTTTTGTCAAGGGTTATGCTCTGATTGAATATGAACATGCTGAGGAAGCCCGGAATGCAATAGAGAATTTAAATGGATCTGAACTTCTTACACAAACCATTTATGTTGACTGGGCCTTCAGTAGTGGACCTATTAATGGGTCAATCAGAAGAAAAAATGCCAGACCACAGCGGGAACGACGTTCAAGGAGCCCTCGTAGGAGGTTTTGA 708 0.5056 MKDSTAPAHSVSAGFHFRGADVELARHLKVTEMQTTAADVEAVDFEPEDDDLMDDDGGADSPRAPPLPKLKSAITGGGASSSLSGPKKTKGRGFRHNSDADRNTRLTASNFESLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYEHAEEARNAIENLNGSELLTQTIYVDWAFSSGPINGSIRRKNARPQRERRSRSPRRRF 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0559 235 MobiDBLite consensus disorder prediction 220 235 - -
Dere05g0559 235 SUPERFAMILY RNA-binding domain, RBD 121 233 IPR035979 GO:0003676
Dere05g0559 235 MobiDBLite consensus disorder prediction 214 235 - -
Dere05g0559 235 MobiDBLite consensus disorder prediction 34 125 - -
Dere05g0559 235 Gene3D - 78 217 IPR012677 -
Dere05g0559 235 PANTHER RNA-BINDING PROTEIN 8A 39 234 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Dere05g0559 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Dere05g0559 235 MobiDBLite consensus disorder prediction 103 120 - -
Dere05g0559 235 MobiDBLite consensus disorder prediction 42 56 - -
Dere05g0559 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 200 IPR000504 GO:0003723
Dere05g0559 235 CDD RRM_RBM8 123 210 IPR033744 GO:0003729
Dere05g0559 235 PRINTS RNA binding motif protein 8 family signature 83 95 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Dere05g0559 235 PRINTS RNA binding motif protein 8 family signature 120 134 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Dere05g0559 235 PRINTS RNA binding motif protein 8 family signature 194 206 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Dere05g0559 235 PRINTS RNA binding motif protein 8 family signature 176 192 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Dere05g0559 235 SMART rrm1_1 130 203 IPR000504 GO:0003723
Dere05g0559 235 FunFam RNA-binding protein 8A-like 59 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0559 Dere-ChrDere05 8921848 8927569 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0559 131 205 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 1.52e-08 52.4