Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0555 ATGCATCCCATGTTCCTTCTCACTGTGCATCCTACCAGCAACACTTTTTTGGTGCTCTGCAATTTTTCCACTGTTTATACATACTTTGTTGGTGCTGTACAATTTCCCTACCATTCATTCCCAGTTGTGTGTCATACTAGCACTACTTTTTGTGCCTTCCTTCAACAGCCCTTCCTGCTATGCATTATGCTAGCGAAGTTAATTACTTTTCCTGCTCTTGATGGTGATGTTAATCTCCAGGGTCATAGGATCCACTTTTGTAACAAGCTTGATGCTTTCTCTAAGCTTGAAAGGAGTATCTTAGTTTTCTGCCAGATTTGGCGTCTTTGCGGTTTTGAATCGGTGGGTTTGGACAAAATCTGGATTGAAGTTTTGATCTTTGCAAAAGTTGATAAAATGCAATCCGATAATGGTAAGTTATTTGTTGGTGGAATATCATGGGACACAAATGAAGAGCGGCTTAGGGAGTATTTTAGTACTTATGGGGAGGTTGTGGAAGCAGTGATCATGAAGGATCGAACAACAGGTAGAGCCCGTGGATTTGGTTTTGTTGTTTTTGCCGACCCAAGTGTTGCCGAGAGAGTCATAAAAGAAAAGCACAGTATTGATGGAAGGATGGTTGAAGCAAAAAAGGCTGTTCCTAGGGATGACCAGAGCATACTGAGTAGAAACAGCGGTAGCAACCATGGTTCTCCTGGTCCAGGCCGCACAAAAAAGATATTTGTTGGTGGTTTAGCATCAACGGTTACAGAGAGTGATTTCAAGAAGTACTTTGATCAATTTGGGACAATAACTGATGTTGTGGTGATGTATGATCACAACACTCAGAGGCCTAGAGGCTTTGGATTTATCACCTATGATTGTGAAGAAGCTGTTGAGAAGGTCTTACTTAAGACCTTTCATGAACTGAATGGTAAAATGGTTGAGGTCAAGCGGGCAGTTCCTAAGGAACTTTCACCAGGACCGAACCGTAGCCCACTGAGTGGATATAACTATGGTCTGAGTAGGGTCAATAGCTTCCTAAATGGCTTTACCCAGGGGTATACTCCAAGTGCTGTTGGAGGCTATGGACTTAGGGTGGATGGTAGATTCAGTCCTGTTGCAAGTGGTCGAAGTGGATTTGCTCCATTTGGATCTGGTTACGGAATGAATATGAATTTTGAGCCTGGCTTGGGCCCTGGATTTGGGGGCAATGGGAATTTCAATAACAATCTGAACTATAATCGGGGATTAAATCCTTATTATATTGGTAGCTCAAATAGGTTTGGGAGTCCTATTGGGTATGATGGTGGTAATGGAGGAAACAATTCTTTCTTCAGCTCTGTGACTCGGAATTTGTGGGGGAATGGTGCTCTTAATTATGGAACAGGTTCTGCAAATTCCAATGCGTACATGGGATCTGGAAGTGGGAATGTTGGCGGAAACACATATGGCAATGCTGGAGTCAATTGGGGTTCTTCAGCAATTTCTCGTCAAGGTGGAATGAACATTACATCACAGAGTACCGGCAACCTTGGCTATGGAGGAGGAGACAACAATTATGGTGTGGGAACTGGAGGGTATGAAAGAAACAATGGTACCAGTATTGCTCCAGCATCATCATACTCTGCTTCAAATGGTGGATTTGATGGAGCTTTTGCTGATATCTACAATAGTAGTTCAGTTTATGGGGAACCCACTTGGCCATCTTCAAATTCTGAGCTAGATGGGTCTGGTCCCTTTGGTTATGGGCTTGGTAGTGCACCTTCAGACGTATCTGCCAAAAGCTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGACAGCCAAACAGGGGAATTGCTACTTAG 1833 0.4315 MHPMFLLTVHPTSNTFLVLCNFSTVYTYFVGAVQFPYHSFPVVCHTSTTFCAFLQQPFLLCIMLAKLITFPALDGDVNLQGHRIHFCNKLDAFSKLERSILVFCQIWRLCGFESVGLDKIWIEVLIFAKVDKMQSDNGKLFVGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFADPSVAERVIKEKHSIDGRMVEAKKAVPRDDQSILSRNSGSNHGSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDCEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPNRSPLSGYNYGLSRVNSFLNGFTQGYTPSAVGGYGLRVDGRFSPVASGRSGFAPFGSGYGMNMNFEPGLGPGFGGNGNFNNNLNYNRGLNPYYIGSSNRFGSPIGYDGGNGGNNSFFSSVTRNLWGNGALNYGTGSANSNAYMGSGSGNVGGNTYGNAGVNWGSSAISRQGGMNITSQSTGNLGYGGGDNNYGVGTGGYERNNGTSIAPASSYSASNGGFDGAFADIYNSSSVYGEPTWPSSNSELDGSGPFGYGLGSAPSDVSAKSSPGYVGGYTVNKRQPNRGIAT 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0555 610 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 238 315 IPR000504 GO:0003723
Dere05g0555 610 MobiDBLite consensus disorder prediction 558 610 - -
Dere05g0555 610 MobiDBLite consensus disorder prediction 218 232 - -
Dere05g0555 610 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 201 IPR000504 GO:0003723
Dere05g0555 610 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 240 297 IPR000504 GO:0003723
Dere05g0555 610 CDD RRM1_hnRNPA_hnRNPD_like 140 210 - -
Dere05g0555 610 SUPERFAMILY RNA-binding domain, RBD 237 325 IPR035979 GO:0003676
Dere05g0555 610 SUPERFAMILY RNA-binding domain, RBD 132 236 IPR035979 GO:0003676
Dere05g0555 610 CDD RRM2_Hrp1p 239 316 - -
Dere05g0555 610 Gene3D - 235 321 IPR012677 -
Dere05g0555 610 FunFam Heterogeneous nuclear ribonucleoprotein 1 137 219 - -
Dere05g0555 610 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 214 IPR000504 GO:0003723
Dere05g0555 610 MobiDBLite consensus disorder prediction 213 237 - -
Dere05g0555 610 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 133 606 - -
Dere05g0555 610 FunFam Heterogeneous nuclear ribonucleoprotein 1 235 322 - -
Dere05g0555 610 Gene3D - 136 220 IPR012677 -
Dere05g0555 610 SMART rrm1_1 139 210 IPR000504 GO:0003723
Dere05g0555 610 SMART rrm1_1 239 311 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0555 Dere-ChrDere05 8833691 8844836 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0555 140 312 Eukaryotic Initiation Factors Gene Family AT2G23350 25.714 6.07e-10 60.5