Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0554 ATGAATTCGCTGATTGAAAATATTTATGGGTTTTTCAGAAGTGCTTATTCTGGGTTTGATTTACTGACGAAGTATTTTTTGTATGTAGATAAAATGCAATCGGATAATGGCAAGTTATTTATTGGAGGAATATCATGGAACACAAATGAAGAGCGGCTTAGGGAGTATTTCAGTACTTATGGGGAGGTTGTGGAAGCAGTGATTATGAAGGATCGGACAACTGGTAGAGCCCGTGGATTCGGTTTTGTTGTTTTTGCTGACCCAGCTGTTGCAGATAGAGTCATAAAAGAGAAGCACAATATTGATGGAAGGATGGTTGAGGCAAAGAAGGCTGTTCCTAGGGACGACCAGAACATACTGAATAGAAACAGTGGTAGTATCCATGGTTCTCCTGGTCCAGGCCGCACAAGAAAGATTTTTGTAGGAGGTCTAGCATCAACAGTTACAGAGGGTGATTTCAAGAAGTACTTCGATCAATTTGGCACAATAACAGATGTTGTAGTCATGTATGATCACAACACTCAGAGGCCAAGAGGTTTTGGATTTATCACTTATGATTCTGAAGAAGCTGTTGAGAAGGCTTTACTTAAGACTTTTCATGAACTGAATGGTAAAATGGTTGAGGTCAAGCAGGCAGTTCCTAAGGAACTTTCACCAGGACCAAACCGCAGCCCACTGAGTGGATATAACTATGGTCTTAGTAGGGTCGATAGTTTCCTAAATGGCTTCACCCAGGGGTGTACTCCAAGTGCTGTTGGAGGCTATGGACTTCAGGTGGATGGTAGATTCAGTCCTGTTGCAAGTGGCCGAAGTGGATTTGCTCCATTTAGATCTGGTTACGGAATGAATATGAATTTTGAGCCTGGCTTGGGCCCTGGATTTGGGGGCAATGGGAATTTCAATAACAATCTTTGCTATGGTCGGGGATTAAATCGTTATTATATTGGCAGCTCAAATAGGTTTGGGAGTCCTATTGGGTATGATGGTGGTAATGGAGGAAACAATTCCTTTTTCAGCTCTGCAACTCGAAATTTGTGGGGGAATGGTGTTCTTAATTATGGAACAAGCTCTGCAAATTCAAGTGCTTATGTGGGATCAGGAAGTGGGAATGTTGGAGGAAACTCATATGGGACTGGAGTGAACTGGGGTTCTTCAGGAGTTTCTGGTCAAGGTGGAATGACCAATGTGTCACAGAGTAGTGGCAACCTTCGTTATGGAGGTGGTGACAATAGTTATGGTTTGGGAGCTGGAGGCTATGGAAGGAGCAGTGGTACCAGTATTGACCCAACACAGTTATACTCTGCATCAAATGGTGTGTTTGATGGGGCTTTTGCTGATTTTCACAACAACAGTTCAGTTTATGGGGATCCCGCTTGGCGATCTTCAAATTCTGAGCGAGATGGGTCTGGTCCCTTTGGTTATGGGCTTGGTAGTGTAGCTTCAGAAGTTCCTGCTAAAAGTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGACAGCCAAATAGGGGAATTGCTACATAG 1527 0.4309 MNSLIENIYGFFRSAYSGFDLLTKYFLYVDKMQSDNGKLFIGGISWNTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFADPAVADRVIKEKHNIDGRMVEAKKAVPRDDQNILNRNSGSIHGSPGPGRTRKIFVGGLASTVTEGDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKALLKTFHELNGKMVEVKQAVPKELSPGPNRSPLSGYNYGLSRVDSFLNGFTQGCTPSAVGGYGLQVDGRFSPVASGRSGFAPFRSGYGMNMNFEPGLGPGFGGNGNFNNNLCYGRGLNRYYIGSSNRFGSPIGYDGGNGGNNSFFSSATRNLWGNGVLNYGTSSANSSAYVGSGSGNVGGNSYGTGVNWGSSGVSGQGGMTNVSQSSGNLRYGGGDNSYGLGAGGYGRSSGTSIDPTQLYSASNGVFDGAFADFHNNSSVYGDPAWRSSNSERDGSGPFGYGLGSVASEVPAKSSPGYVGGYTVNKRQPNRGIAT 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0554 508 Gene3D - 35 119 IPR012677 -
Dere05g0554 508 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 32 504 - -
Dere05g0554 508 SUPERFAMILY RNA-binding domain, RBD 30 135 IPR035979 GO:0003676
Dere05g0554 508 SUPERFAMILY RNA-binding domain, RBD 136 340 IPR035979 GO:0003676
Dere05g0554 508 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 113 IPR000504 GO:0003723
Dere05g0554 508 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 100 IPR000504 GO:0003723
Dere05g0554 508 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 196 IPR000504 GO:0003723
Dere05g0554 508 FunFam Heterogeneous nuclear ribonucleoprotein 1 134 221 - -
Dere05g0554 508 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 214 IPR000504 GO:0003723
Dere05g0554 508 FunFam Heterogeneous nuclear ribonucleoprotein 1 36 118 - -
Dere05g0554 508 SMART rrm1_1 138 210 IPR000504 GO:0003723
Dere05g0554 508 SMART rrm1_1 38 109 IPR000504 GO:0003723
Dere05g0554 508 MobiDBLite consensus disorder prediction 486 508 - -
Dere05g0554 508 CDD RRM1_hnRNPA_hnRNPD_like 39 109 - -
Dere05g0554 508 Gene3D - 134 220 IPR012677 -
Dere05g0554 508 CDD RRM2_Hrp1p 138 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0554 Dere-ChrDere05 8826564 8833397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0554 30 299 Eukaryotic Initiation Factors Gene Family AT1G71770 27.445 1.03e-14 75.1