Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0541 ATGGTGTTCCTTGTGTTTCAGACACCCTGTGGTCACAGCTTTTGCTTGAAGTGCTTTAGAAATGGATTGCAAAAGGGAAGCGTCAGTGATCAGATTGTGGGAACGAAATCCCTTCTAAGATGGCAAGCCAACCACGAATCAACCACACAACCTGCTATTGCTATCAGATTGTCAAGAGTGTCAGATTCAGTTAGCGTTTATGATGATCTTTATATGCAGAATCAGAGTAAAGCTAAAAAAGATGGTGGAAATTTTGGTGGTGGGAAGATCTTGGTGACAGTAGGACAGGATCACTTTGAGCCAATTCTTGCAGAGAATGACCCTGTGAGGAATCAGGGGCATAGTAGTTATGGTGCACAGTCAGTGGTGCTCATGGGAGGCTATGACGATTATAAGGACAAGGGTGACTGGTTTCTCTACACTGGCAGTGGTGGAAGAGAAATAGGTGGCAACAAATATTATACAAGCGAAGAACATCCTTTCGACCAGAAGTTCGAAAACTTAAATGAAGCATTGAGAGTAAGTTGCGAGGAAGGTTATCCAGTTCGGGTTGTAAGGTCTCACAGGGGGAAACGCTCTTATTATGCACCAGAGACAGGGTTACGCTATGATGGAATTTATAGAATAGAGAAATGCTGGCAAAATATTGGAACACAGCTTACTGAGTTGGTTTTCCTAAACTCACAAAGAAAGCTATTCTATTACAGGGTTAAGAGGTTTGCAGATATTATTGTAAGATGTGACAATGAACCCGCCCCATGGATAAGTGACAATTATGGTGACCGTCCATGCCCCTTGCCTGCAATTCGAGAGTTGAAGAATGCAATCGATTTAACCGAAAGGAAGGAAGCTCCTTCATGGGAATATGATAGATCTCCACCACATGAGAGGAAACAGGACAGTGCAAACCCAGAAGATGGGACAAAAGTAACTATGGTCAGACGAGAAGCACAACTTCGGTCTCTGAGAAAAAGGCTTCGAAAAGAGTATAGTTGCAACCTGTGTGGAAATAGGCTGTGTCTTCCTCTTACTACGCTATGCGCTCACAACTTCTGCAAAGCTTGTCTTTTGGGAGCCGTATCTGCGCTAACTTTGTTGAGAAACAGCACAAGTGAAGCAGGAGGCTATTTACTACCAGAAATCAACATTACCAATTGCCCATCTTGTTCATAA 1173 0.4314 MVFLVFQTPCGHSFCLKCFRNGLQKGSVSDQIVGTKSLLRWQANHESTTQPAIAIRLSRVSDSVSVYDDLYMQNQSKAKKDGGNFGGGKILVTVGQDHFEPILAENDPVRNQGHSSYGAQSVVLMGGYDDYKDKGDWFLYTGSGGREIGGNKYYTSEEHPFDQKFENLNEALRVSCEEGYPVRVVRSHRGKRSYYAPETGLRYDGIYRIEKCWQNIGTQLTELVFLNSQRKLFYYRVKRFADIIVRCDNEPAPWISDNYGDRPCPLPAIRELKNAIDLTERKEAPSWEYDRSPPHERKQDSANPEDGTKVTMVRREAQLRSLRKRLRKEYSCNLCGNRLCLPLTTLCAHNFCKACLLGAVSALTLLRNSTSEAGGYLLPEINITNCPSCS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0541 390 ProSiteProfiles YDG domain profile. 74 239 IPR003105 -
Dere05g0541 390 MobiDBLite consensus disorder prediction 285 308 - -
Dere05g0541 390 Pfam RING-type zinc-finger 7 22 IPR027370 -
Dere05g0541 390 Pfam SAD/SRA domain 113 221 IPR003105 -
Dere05g0541 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 390 IPR013083 -
Dere05g0541 390 SMART ring_2 332 389 IPR001841 -
Dere05g0541 390 SUPERFAMILY PUA domain-like 113 280 IPR015947 -
Dere05g0541 390 Gene3D - 107 284 IPR036987 -
Dere05g0541 390 ProSiteProfiles Zinc finger RING-type profile. 332 390 IPR001841 -
Dere05g0541 390 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 7 113 IPR045134 -
Dere05g0541 390 ProSitePatterns Zinc finger RING-type signature. 347 356 IPR017907 -
Dere05g0541 390 SMART G9a_1 104 229 IPR003105 -
Dere05g0541 390 SUPERFAMILY RING/U-box 326 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0541 Dere-ChrDere05 8626941 8632553 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0541 6 390 C2H2 Transcription Factor Family AT5G39550 41.190 5.02e-100 308