Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0539 ATGAAATCGTCAAACAACATATGGATTCGACGCCAACAATGTCCATGTGGAGATTGGAAGTGTTTTATTAAGTATGACAGAGATGATCAGATATTACTAAAATCTCAGCCTACAAAGACGGAGACAGTGCCTTTGTCATCGTCAGAAGCTGTCTTCACTCCTTATGTGGGTCAAATATTCAAAAGTGATGATGATGCATTTGAATACTATAGCAGTTTTGCCCGGAAGAATGGATTTTCAATCAGAAAAGCACGCTCAACAGAAAGTCAAAATCTAGGAATATATAGAAGAGATTTTGTTTGTTACAGGTCTGGGTTCAATCAACCGAGAAAAAAGGCCAATGTGGAACATCACAGAGAACGAAAATCTGTACGATGTGGATGTGATGCAAAATTGTACTTGACTAAGGAAATTGTTGATGGTATTACTCAGTGGTATGTGTCACAATTTAGTAATGTTCATAACCATGAATTGTTGGAAGATGACCAAGTACGTCTTCTACCTGCGTATCGAAAAATACATGAGGCTGATCAAGAACGCATTCTTCTACTGTCCAAAGCTGGGTTCCCTGTGAACCGTATTGTGAAGGTGTTAGAGCTGGAAAAAGGAGTTCAGCCTGGACAGCTTCCTTTCATAGAAAAGGATGTTAGGAATTATGTTCGGACTTGCAAGAAAGCAGTTCAAGAAAATGATGCTTTACTGTCTGAAAAAAGAGAAAATGATATGCATGAACTTGTGGAGACCTGTAAGGCAATGCTAGACAAGGATCCCAATTTTATTTTTGATTATACTGCTGATGAAGATGGTAAAGTTGAAAATATAGCTTGGTCATACAGTGAATCTATTCGTGCATATTCTGTTTTTGGTGATGTAGTTACTTTGGACACCACATACCGTTCTGTCACTTATGGATTGCTTCTGGGGGTATGGTTTGGCATAGATAATAATGGAAATGCAATATTATTTGGGTGTGTATTGTTACAAGATGAAAGTTCTTATTCATTTACTTGGGCTTTACAGACATTTTTACGATTTATGAGAGGGAGACATCCGCAGACAATTTTAACTGACATAGATCCAGGTCTTCGAGATGCTATTTCGAAGGAGTTGTCTGAAACTAAACATGTTATATGCACGTGGCATATTCTATCAAAAATATCTAATTGGTTTTCTGTTCCCTTAGGATCACAGTATGCTGATTTTAGGGTAGAGTTTGATATATTGTGTCACCTGGAGAGCATAGAAAATTTTGAACATCAGTGGGATCTTTTTGTAGCTCGATTTGGGCTTGTTTCTGACAAGCATATAGCTTTGCTATTCTCATTTCGAGCTTCTTGGCCTTTGTGCTACGTTAAAAGTTATTTTCTAGCTCGTTCATTGACAGCAGAGTATTCACAATCTTTGGATTCAGTCTTGAAAAGAATTTTAGATTCACAAACATGTCTCCAAGGATTTTTTGAGCAGGTAGGTATTGCTGCTAACTCGTCAATGTTGGCAGGAGAAGGGATGCATTACATGTGTATAAAGACGTGCATGCCTGTTGAAGAACATGCAAGGAGTATTCTTACACCTTATGCTTTCAAAGTGTTGCAACATGAAATTGTGCTGTCATTGCAATATGCAACAACAGAACTGACCAACGGATCATACCTTGTTCAGCACTATAAGAAAGTGGACGAAGAGCGCCTTGTAATTTGGGTGCCAGCTGATGAGCAAATTCAGTGTTCCTGTAAGGAATTTGAACATTCAGGAATATTGTGCCGCCATTCAATTCGGGTACTTACTGTGAAGAACTGCTTTCAACTACCTATGAAATATTTACTCCCTCGCTGGCAACAAGAAAGTTCCATGGCTCCTGAAGATGAACAAAACCTTCAGAGCAGTGATGAGTGTGCTCAAGCCTTTCATTCTTTGGCAGCCACTTTGCTGAGAGAATCATTAGTCTCCAAGGAACGATTTAAATATGTTCATAGAGAACTCACAGGAATTCTTGATCATGTTAAAAATATGGAAGTTATAGATGAATATGCTATCAATGTGGCAACTAATCATGCTAGTGAATCCTAG 2067 0.3832 MKSSNNIWIRRQQCPCGDWKCFIKYDRDDQILLKSQPTKTETVPLSSSEAVFTPYVGQIFKSDDDAFEYYSSFARKNGFSIRKARSTESQNLGIYRRDFVCYRSGFNQPRKKANVEHHRERKSVRCGCDAKLYLTKEIVDGITQWYVSQFSNVHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPVNRIVKVLELEKGVQPGQLPFIEKDVRNYVRTCKKAVQENDALLSEKRENDMHELVETCKAMLDKDPNFIFDYTADEDGKVENIAWSYSESIRAYSVFGDVVTLDTTYRSVTYGLLLGVWFGIDNNGNAILFGCVLLQDESSYSFTWALQTFLRFMRGRHPQTILTDIDPGLRDAISKELSETKHVICTWHILSKISNWFSVPLGSQYADFRVEFDILCHLESIENFEHQWDLFVARFGLVSDKHIALLFSFRASWPLCYVKSYFLARSLTAEYSQSLDSVLKRILDSQTCLQGFFEQVGIAANSSMLAGEGMHYMCIKTCMPVEEHARSILTPYAFKVLQHEIVLSLQYATTELTNGSYLVQHYKKVDEERLVIWVPADEQIQCSCKEFEHSGILCRHSIRVLTVKNCFQLPMKYLLPRWQQESSMAPEDEQNLQSSDECAQAFHSLAATLLRESLVSKERFKYVHRELTGILDHVKNMEVIDEYAINVATNHASES 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0539 688 Pfam FAR1 DNA-binding domain 68 159 IPR004330 -
Dere05g0539 688 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 46 668 IPR031052 GO:0006355
Dere05g0539 688 SMART 26again6 573 600 IPR006564 GO:0008270
Dere05g0539 688 ProSiteProfiles Zinc finger SWIM-type profile. 563 598 IPR007527 GO:0008270
Dere05g0539 688 Pfam MULE transposase domain 291 384 IPR018289 -
Dere05g0539 688 Pfam SWIM zinc finger 570 597 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0539 Dere-ChrDere05 8604324 8606561 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Dere05g0539 MULE 1.6e-21 CL0219