Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0534 ATGGCGGATTCGGATAACGAGTCGGGTGGGTACAACAACAACGGACACGCAAACGAGTCGTTGGCGAAGGAACAGGACAGGTTCTTGCCGATAGCGAACGTGAGCAGGATAATGAAGAAAGCGTTGCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATAAGCTTCGTGACGGGGGAGGCGTCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACCACTTTGGGATTCGAGGATTATGTGGAGCCCTTGAAGATTTACCTTCAGAAGTATCGAGAGATGGAAGGGGAGAAGACTTCTGTGGGGAGACACGGCGAGAAGGACGGTGGCTCCGGCGGCGGTGGAAGTGGGATTATTGGGTTTAACGGAGTTGAGGGTATGTACGGTGGGATGATGGCGGGGCATCACCAGGGACAGGTGTACGGTTCTAGTGGGTTTAACCAAGGCAGTGGTGGTGGAGGTTCCAACGTGAGATCTAGGTAG 543 0.5506 MADSDNESGGYNNNGHANESLAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQKYREMEGEKTSVGRHGEKDGGSGGGGSGIIGFNGVEGMYGGMMAGHHQGQVYGSSGFNQGSGGGGSNVRSR 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0534 180 Gene3D Histone, subunit A 15 133 IPR009072 GO:0046982
Dere05g0534 180 FunFam Nuclear transcription factor Y subunit B-3 17 136 - -
Dere05g0534 180 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 142 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dere05g0534 180 MobiDBLite consensus disorder prediction 117 136 - -
Dere05g0534 180 MobiDBLite consensus disorder prediction 1 23 - -
Dere05g0534 180 SUPERFAMILY Histone-fold 25 129 IPR009072 GO:0046982
Dere05g0534 180 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Dere05g0534 180 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dere05g0534 180 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Dere05g0534 180 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Dere05g0534 180 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Dere05g0534 180 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0534 Dere-ChrDere05 8565153 8565695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0534 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.721 1.25e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dere05g0534 CBFD_NFYB_HMF 1.6e-27 CL0012