Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere05g0517 | ATGGCTTCCAGGAAAGGAGACAATCATCCCTCCGGCAACGGTGCCAGTCCTGGGAAAATCTTTATTGGAGGATTAGCGAGAGACACAACCTTGGATACCTTCGTCAAGTACTTTGAGAAGTATGGAGAGATCACTGACTCGGTGATAATGAAAGATCGACACACGGGTCGACCCAGGGGTTTCGGGTTTATTACGTATGCTGACCCTTCTGTTGTTGACCAGGTCATTCAGGAGGACCATGTGATCAATGGCAAGCAGGTTGAGATCAAGAGGACTATTCCGAAGGGTTCAGCACAAGATAACGATTTTAAAACCAAGAAGATTTTTGTTGGTGGTATACCTTCCATGGTGACTGAAGATGAATTAAAGAGCTTTTTCTCGAAGTATGGGAAGGTGGTGGAACATGAGATTATACGTGACCACACTACTAAACGATCTCGTGGTTTTGGATTTATTGTGTTTGACAATGAAAAGGTTGTTGACAATATACTTGCAAATGGAAATATGATTGATATGGCGGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAAGCCTCAAACCCAGCACCTCATCCTCCATTTGGTAGTGACTCTAGGGCACGCCCATACAGTGATGGTTATGGTGGCTTTGGCAGTTCTTATAGCAGTTTTGGTGGTGGCAATTTTGGTCCTGCTTCTTATAGGTCACTTGGAGGTTTTGGTGGTAGGCTTGGTGATTATGGTGGGTATGGTGGTGATGACTTTGGTGGTAGTTTTGGGGGTTACAGTGGTAGTGGTTTTGCTGGCTACAGAGGAGACTCTTCATTTGGCTATTCTAGTCGGTATGGTTCCTCCTATATGGGGAGCCTTGGTGGTGGATATGGTGCTGGTGGGTTAGGTGCATATGGGCGAGGAAGTGGGGGCTATGATAGCTATGGTGGTCCAGGCTCTGGTGGGGGTTATGATTCAGGTTCTAGTGCTGGCTATGGTGGGGCAGGAGGTCCTTATGGCAGTAGGGGAAGTTATGGTGGCAGTAGCCGTTACCATCCTTATGCAAGATAG | 1047 | 0.467 | MASRKGDNHPSGNGASPGKIFIGGLARDTTLDTFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQEDHVINGKQVEIKRTIPKGSAQDNDFKTKKIFVGGIPSMVTEDELKSFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDNEKVVDNILANGNMIDMAGTQVEIKKAEPKKASNPAPHPPFGSDSRARPYSDGYGGFGSSYSSFGGGNFGPASYRSLGGFGGRLGDYGGYGGDDFGGSFGGYSGSGFAGYRGDSSFGYSSRYGSSYMGSLGGGYGAGGLGAYGRGSGGYDSYGGPGSGGGYDSGSSAGYGGAGGPYGSRGSYGGSSRYHPYAR | 348 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere05g0517 | 348 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN | 8 | 348 | - | - | |
| Dere05g0517 | 348 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 17 | 98 | - | - | |
| Dere05g0517 | 348 | Gene3D | - | 18 | 96 | IPR012677 | - | |
| Dere05g0517 | 348 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 106 | 184 | IPR000504 | GO:0003723 | |
| Dere05g0517 | 348 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 108 | 170 | IPR000504 | GO:0003723 | |
| Dere05g0517 | 348 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 20 | 80 | IPR000504 | GO:0003723 | |
| Dere05g0517 | 348 | SUPERFAMILY | RNA-binding domain, RBD | 101 | 213 | IPR035979 | GO:0003676 | |
| Dere05g0517 | 348 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 99 | 223 | - | - | |
| Dere05g0517 | 348 | MobiDBLite | consensus disorder prediction | 181 | 202 | - | - | |
| Dere05g0517 | 348 | SUPERFAMILY | RNA-binding domain, RBD | 10 | 97 | IPR035979 | GO:0003676 | |
| Dere05g0517 | 348 | Gene3D | - | 97 | 217 | IPR012677 | - | |
| Dere05g0517 | 348 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 18 | 94 | IPR000504 | GO:0003723 | |
| Dere05g0517 | 348 | SMART | rrm1_1 | 107 | 180 | IPR000504 | GO:0003723 | |
| Dere05g0517 | 348 | SMART | rrm1_1 | 19 | 90 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere05g0517 | Dere-ChrDere05 | 8275592 | 8277376 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere05g0517 | 4 | 170 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 26.738 | 4.37e-13 | 68.6 |