Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0513 ATGGGCCTCTCAAGTCTCCCAGCTCCATCTGAAGGAGTATTGTGTGTGCTTTTGGTAAATACTGCCTTGTCCATATCCTTAGTCAAAGGCATTGTTAGAACAATCCTCCACATTGTTGGAATCAGTCTTTCATCATCCTCCACCACTCCATCATCATCCCATTCACAAGAGATCTCTCAAAACCCACCCGAATCATTCGAATTTGATCTATGTTCGCCGGAAAGTTACATCGAAGAGTTCAGAAGCCGAACCCCCACAGTTCAGTTCGACAGTATGTGTAGCTGCAAACAACTTGAACATGACTGCTCTGTATGTCTGACTCAATTCGAACCAGAATCTGAGATAAATCGCTTGTCATGTGGCCATCTCTTCCACAAGGTATGCTTGGAGAAGTGGTTGGCCTATTGGAACATTACATGCCCACTTTGCAGGACTCCCTTATTGCCTGAAGAAGAGATTTCTTCCTGCTTTTGGTGA 477 0.4465 MGLSSLPAPSEGVLCVLLVNTALSISLVKGIVRTILHIVGISLSSSSTTPSSSHSQEISQNPPESFEFDLCSPESYIEEFRSRTPTVQFDSMCSCKQLEHDCSVCLTQFEPESEINRLSCGHLFHKVCLEKWLAYWNITCPLCRTPLLPEEEISSCFW 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0513 158 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Dere05g0513 158 Pfam Ring finger domain 101 144 IPR001841 -
Dere05g0513 158 MobiDBLite consensus disorder prediction 45 65 - -
Dere05g0513 158 SUPERFAMILY RING/U-box 101 149 - -
Dere05g0513 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 149 IPR013083 -
Dere05g0513 158 SMART ring_2 102 143 IPR001841 -
Dere05g0513 158 PANTHER - 1 156 IPR044249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0513 Dere-ChrDere05 8204116 8204592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0513 1 158 C3H Transcription Factor Family AT2G04240 65.432 4.03e-65 194