Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0512 ATGGGTTATATGTGTGACTTTTGCGGAGATCAGAGGTCCATGGTGTACTGCCGTTCTGATGCTGCATGCTTATGTTTGTCATGTGATCGAAATGTGCATTCTGCTAATGCCCTTTCTAGGCGTCATTCGAGAACTCTTTTATGTGAGAGATGCAATTCACAACCTGCTCTTGTCCGGTGTCCTGACGAGAAGATTACACTATGTCAGAACTGTGATTGGTTGGGTCACAGTACATCTACATCTTGTTCATCGCATAAGAGGCAAACAATCAACTGCTACTCTGGGTGCCCTTCAGCAGAAGAACTTTCTTCAGTATGGTCATTTTTCTTAGATATCCCTTCTCTGGGCGATGCTACCTGTGAGAAGGAGCTAGGTTTGATGAGCATTAATGAGAACGGCAACAAGAGTGCTTGTGTTCCTCCAGAAAGCCAGAATGTATCTGGTTCTGCTCAAGTGACTAGTACGCACAGCTTGGATAAATCTTGGGTTGGGGCCTCTTCAATGCCTGAGTCAAGCTCAGAACCTCGTATTTTGGACCAGTCAACTGGACCTACCAATGAATGTTTGCCCAAGTTATATTGTCCCGGTACAAAAGGTCCTATGCCACGTGTAGATGAAGATGATAACCTGTATGGCGATTTCAACATGGATGAGGTGGATCTGAATCTTGAGAATTACGAGGAACTTTTTGGTATGGCTCTTAGTCATTCTGAAGAGCTTTTTGAAAATGGTGGCATTGATAGCTTGTTTGGGACAAAGGACGTGTCTGCTGGTGATTCCAATTGTCAGGGTGCTGTTGCTGCTGAGGGTTCACCGGTTGGACTGGTCAATGCAATGCAACCAGCATGCAGCAATGCTGCATCTGCAGATTCCATCTTGAGTACCAAAACTGAGCCAGTTCTTTGTTTTACGGGAAGGCAAGGCCAATCAAATCTTTCTTTTTCCGGAGTCACAGGTGAGAGTAGTGCTGGAGATTATCAAGACTGCGGTGCTTCTTCAATGCTTCTAATGGGAGAGCCTCCTTGGTGTCCTACTTGTCCTGAGAATTCCATGCAATCTGCCAACCGCAGCAATGCTGTCATGCGTTACAAGGAGAAGAAGAAGACACGCAAGTTCGAGAAAAAAGTGAGGTATGCCTCTCGCAAGGCAAGAGCCGATGTCCGAAGGCGTGTGAAGGGCCGGTTTGTCAAAGCTGGGGAAGCCTATGATTATGACCCTTTGAGCCCAACCAGAAGCTACTGA 1242 0.463 MGYMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPALVRCPDEKITLCQNCDWLGHSTSTSCSSHKRQTINCYSGCPSAEELSSVWSFFLDIPSLGDATCEKELGLMSINENGNKSACVPPESQNVSGSAQVTSTHSLDKSWVGASSMPESSSEPRILDQSTGPTNECLPKLYCPGTKGPMPRVDEDDNLYGDFNMDEVDLNLENYEELFGMALSHSEELFENGGIDSLFGTKDVSAGDSNCQGAVAAEGSPVGLVNAMQPACSNAASADSILSTKTEPVLCFTGRQGQSNLSFSGVTGESSAGDYQDCGASSMLLMGEPPWCPTCPENSMQSANRSNAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAGEAYDYDPLSPTRSY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0512 413 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dere05g0512 413 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Dere05g0512 413 SMART bboxneu5 4 47 IPR000315 GO:0008270
Dere05g0512 413 SMART bboxneu5 48 90 IPR000315 GO:0008270
Dere05g0512 413 CDD Bbox1_BBX-like 5 47 - -
Dere05g0512 413 MobiDBLite consensus disorder prediction 159 184 - -
Dere05g0512 413 ProSiteProfiles CCT domain profile. 356 398 IPR010402 GO:0005515
Dere05g0512 413 Pfam CCT motif 356 398 IPR010402 GO:0005515
Dere05g0512 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0512 Dere-ChrDere05 8142985 8148966 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0512 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 57.042 3.96e-157 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Dere05g0512 CCT 2.5e-16 CL0281