Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0484 ATGAGTTCGATTCCCACGCGCCTGCATGCGTTCCCAAGTAGTGGCTTAGCTTCACTCCATATCTTGCTTCCTTGGCTTATTGGTGCCTGCAATAATAGATATCATCTCAAGCCCTTAACCCCGTTACTGCATTCCAAAACAACACAAGAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATCTCTCTAAAGTAATGGCTACACAAGCTCTGGTATCTTCCTCATCTCTCACCTCGTCGGTGCAGGCTGCGAGACAGATTGTGGGAGGAAGATCGACCCAGTATCCGTTTGGGTCTACCAGAAAAGCTTCTTTTGTGGTGAAGGCGGCTTCTACTCCCCCTGTCAAGCAAGGAGCAGATAGACCCTTGTGGTTTGCATCAAAACAAAGTCTTTCTTACTTGGATGGCAGCCTTCCAGGTGACTATGGATTTGACCCTCTAGGACTGTCAGACCCAGAAGGAACAGGAGGGTTCATCGAACCCAGATGGCTAGCATATGGAGAGATCATCAACGGGCGTTATGCAATGTTGGGTGCAGTAGGAGCCATAGCACCAGAAATCCTAGGCAAAGCTGGTCTAATCCCTCAGGAGACAGCACTCCCATGGTTCAAAACAGGAGTGATACCACCAGCAGGAACCTACAACTACTGGGCCGACCCATACACACTCTTTGTGTTAGAAATGGCACTGATGGGCTTTGCAGAGCACAGGAGATTCCAAGATTGGGCCAAGCCCGGGTCCATGGGGAAGCAGTACTTCTTGGGCCTGGAAAAAGGCTTGGGAGGGTCTGGTGACCCAGCTTACCCTGGAGGCCCATTCTTTAACCCTCTTGGGTTTGGGAAGGATGAAAAGTCAATGAAGGATTTGAAGCTGAAGGAAGTGAAGAATGGGAGGTTGGCTATGTTGGCTATCTTGGGATACTTTGTACAAGGCCTTGTGACTGGTGTAGGACCCTACCAGAACCTTCTGGATCATTTGGCTGATCCTGTGCACAACAATGTGTTGACCAGCCTCAAGTTCCATTAA 1035 0.4918 MSSIPTRLHAFPSSGLASLHILLPWLIGACNNRYHLKPLTPLLHSKTTQEISLSLSLSLSLSLYLSKVMATQALVSSSSLTSSVQAARQIVGGRSTQYPFGSTRKASFVVKAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVHNNVLTSLKFH 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0484 344 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 77 339 IPR001344 GO:0009765|GO:0016020
Dere05g0484 344 FunFam Chlorophyll a-b binding protein, chloroplastic 125 343 - -
Dere05g0484 344 Gene3D Chlorophyll a/b binding protein domain 126 343 - -
Dere05g0484 344 Pfam Chlorophyll A-B binding protein 135 313 IPR022796 -
Dere05g0484 344 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Dere05g0484 344 SUPERFAMILY Chlorophyll a-b binding protein 123 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0484 Dere-ChrDere05 7600263 7601981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0484 87 344 Chloroplast and Mitochondria Gene Families AT1G61520 87.984 1.54e-167 466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0484 05 7600263 7601981 Dere05g0484 05 7600263 7601981 ECH