Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0480 ATGGCTTCTTCTTCCTCTTCCCGTGCTTCTTCAAAGAAATATGATGTTTTCATCAGCTTCAGAGGTGAAGACACACGCACCAATTTCACAAGCCATCTTGACTATGCTCTCTACAGAAGCAAAATCGAGACCTACATTGATTATAGGCTTGAGAAAGGAGATGATGTTTGGCCATCACTTGTCAAAGCCATTGAAGATTCAGTTCTGTTCCTTGTCATTTTCTCTGAAAATTATGCATCGTCCACATGGTGCTTGAATGAGCTCACCACAATTCTTGAGTGCTCTAAAAGAGAAGAGGGGCGTCATGTTCTTCCAGTGTTCTACAAGGTATACCCTACAGATGTACGGAAGCAAACGCGGAGTTACCAAAAAGCATTTGCAGAACACGAACAACGCAATGACAACGAACGAGTGCAGAAATGGAGGGCTGCTCTCACTCAAGCTGCTAATTTATGTGGCTGGGACTCTATTGCTTATAGGAGTGAAGCTGCGCTTATTGTAGACATTGTCAAGAGTGTTTTGATGAAGTTGGACTCTATTTACCAAACTGGTCATTCAGTTGGTCTTATTGGAATCCATGAACGAATTGGAACTGAATCCATCAAAGGCATAGCTCTGGACATGTCAAAAGTTGAGGAACTGCACTTGAGTCCTGAAGTCTTTGCTAGGATGCGCAAGCTTAGATTTCTTCAAATTTACGGCTTTGATTCTGAAGAGTACAGATTCAATCTTCCTCAAGGCCTTAAATCTTTACCAAATGAACTCAGACTTCTTCTTTGGGATAAATACCCATTGAAGTCCTTGCCATTGACATTTTCTGCTGAGAAACTTGTTTCTTTTGAAATGCCAAATAGCCATGTCAGAATACTTTGGAATGGACAGCAAAATCTTGTGAACTTAAGGAAAATTGTCCTCAGTGATTCCTATAGTCTAATCGAGCTCCCAGATCTTTCAAAGGCCATAAATCTTGAACGAGTAAATCTCATCAGCTGTACAAGCTTGCGTAACATTCATCCTTCTATTTTATCATTGCCCAAGCTTGAGGTTCTACATCTGGATTGGTGCGAGGCCCTTACTAGCCTTAAAAGTGACACCTCTTTAAGATCTCTTCGTGAGCTTACCCTCTATGACTGCTCAAGACTCAAGGAATTTTCAGTCACCTCAGAGAATATGAAGCATCTGAATCTAGCAGGGACTGCTGTGAATGAATTGCCATCATCTTTTGTAAGTCAAGGAAAACTTGAAACATTCTCTCTCTATGATGGCAGAAAACTTCAGAATCCTCCAAGCAAGTCAGGTGGTGTGATATCTCTTGGCAATTTTCATACCGGAGACAATTACTTGCACCTTGATGCATCAAATCTGCGTTTCTTATATGATGGCTTAAGATCTTTGGAAGCCCTGCCTCATAATACTAGCATGTTTTCTTCGTTAGAAATCTTGTCAGTTGTTGGAACTGAACTAAGAAGCTTGCCTGCGAGCATCAAGCACCTCTTGAGGCTTCTATATCTTCGCCTGGATTCATCCAGAAGACTTCAGTCTCTGCCAGATCTTCCTTCATCCTTGGAAAAATTAGAAGCCAATGACTGCACTTCACTTGAGACACTAAACTTCTCTTCATCAACTTCTCAACTATTGAAGACAAACAAGATATGCTTTGACTTCCAAAACTGTGTGAAGTTGGATGAACATTCACTCGGAGCAATTGGATTGAATCTCATGGTTGAGATAATCAAATCTGTTCCTGCCATGGAAAGGTGCAGTTTTTCGAATGATAAGGCTGAAGTTATATACTCAGGTAGCAGAGTTCCAGAGTGGTTCATACATAGGACAACACAAGCTCCCATTACTATTGATCTCTCTTCTGCTCTTCATTGTTCTGAGGATTGGGGTTTCATCTTTTGCCTTGTTGTTCCTAAGTCCCCATCAATTGAATGGATTCGAATCGAATGTGAAGCCAACTTGGAAATCAGTCACGGTGAATGGGAAGATGGAGGGGAGTATTTCTCAGTCTCTGCCATGCATGCTAGCAACTTCACCTCGGATCATGTTTTTCTCTGGTACGATAAAAGCCTTTGTTCTGAAATACAAGAAAAAATCAAAGAAAGTGTGGCAGATGATCAGAGCAACACTTGTCAACCAAAGGTTTCATTAAATTTCAGGGTTCATTATGGTGTTCAGGACAATAATAATAACCTTCAACAAGGATGCATGGACGTGAAAGAGTGTGGGGTGTGCCCAACATATGCATCCGAATATCATAGTTTCATTGAAAAATTGCAGTTGGAATTAGAGTCGCAAGCCAATGCAGTTGAAATGGGACATGGAAGCTCTTACAAGAACAAACATAAATCCGAGGAATTTGTCTTTCCTTCTCTTACAAGAACCTGGAAGAATGGAACAAATGGGTTGAAAGATATCTTCTCCCTTTGA 2433 0.4085 MASSSSSRASSKKYDVFISFRGEDTRTNFTSHLDYALYRSKIETYIDYRLEKGDDVWPSLVKAIEDSVLFLVIFSENYASSTWCLNELTTILECSKREEGRHVLPVFYKVYPTDVRKQTRSYQKAFAEHEQRNDNERVQKWRAALTQAANLCGWDSIAYRSEAALIVDIVKSVLMKLDSIYQTGHSVGLIGIHERIGTESIKGIALDMSKVEELHLSPEVFARMRKLRFLQIYGFDSEEYRFNLPQGLKSLPNELRLLLWDKYPLKSLPLTFSAEKLVSFEMPNSHVRILWNGQQNLVNLRKIVLSDSYSLIELPDLSKAINLERVNLISCTSLRNIHPSILSLPKLEVLHLDWCEALTSLKSDTSLRSLRELTLYDCSRLKEFSVTSENMKHLNLAGTAVNELPSSFVSQGKLETFSLYDGRKLQNPPSKSGGVISLGNFHTGDNYLHLDASNLRFLYDGLRSLEALPHNTSMFSSLEILSVVGTELRSLPASIKHLLRLLYLRLDSSRRLQSLPDLPSSLEKLEANDCTSLETLNFSSSTSQLLKTNKICFDFQNCVKLDEHSLGAIGLNLMVEIIKSVPAMERCSFSNDKAEVIYSGSRVPEWFIHRTTQAPITIDLSSALHCSEDWGFIFCLVVPKSPSIEWIRIECEANLEISHGEWEDGGEYFSVSAMHASNFTSDHVFLWYDKSLCSEIQEKIKESVADDQSNTCQPKVSLNFRVHYGVQDNNNNLQQGCMDVKECGVCPTYASEYHSFIEKLQLELESQANAVEMGHGSSYKNKHKSEEFVFPSLTRTWKNGTNGLKDIFSL 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0480 810 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 201 388 IPR044974 GO:0006952
Dere05g0480 810 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 179 - -
Dere05g0480 810 SUPERFAMILY L domain-like 204 537 - -
Dere05g0480 810 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 154 IPR035897 -
Dere05g0480 810 ProSiteProfiles TIR domain profile. 12 177 IPR000157 GO:0007165
Dere05g0480 810 Pfam TIR domain 13 183 IPR000157 GO:0007165
Dere05g0480 810 Gene3D - 10 182 IPR035897 -
Dere05g0480 810 SMART till_3 13 151 IPR000157 GO:0007165
Dere05g0480 810 Pfam C-JID domain 599 752 IPR045344 -
Dere05g0480 810 Gene3D Ribonuclease Inhibitor 390 569 IPR032675 -
Dere05g0480 810 Gene3D Ribonuclease Inhibitor 194 389 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0480 Dere-ChrDere05 7562299 7566176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0480 197 511 WRKY Transcription Factor Family AT4G12020 37.346 9.27e-43 167