Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0460 ATGAAGCTCAATTTGGGTTGTCCCAATCTCCTGGTTTTACTTTTTCTCCTTGGTTCCACTTCAATATCCATTTTCCTCCCACAAATGGCTCTTGCAGCCACACCCAAGCTCAACAGTGATGAAGTGAAGGCATTAAAGGAGATAGGGAGGAAACTGGGGAAGAAGGACTGGGACTTTGGGATGGATCCCTGCAGTGGAAAAGGCAGCTGGAACGTGTCTGAGGAGAGGAAAGGCTTTGCCAACTCTGTGATCTGTGATTGCTCCTTCAATCACAATTCTTCTTGCCATGTTGTAAGCATATTTTTGAAGTCTCAGAATCTTTCTGGCACTCTTCCACTAGAGTTTTCCAAGCTTCAGTATCTCAAGCAATTGGACCTTAGTCGTAACATCTTCACTGGTTCTATACCTCAGCGGTGGGCTACTATGCACTTGGTTGAGCTCTCTTTCATGGGAAACAAACTATCAGGTCCTTTTCCGAAAGTTCTTACCAATATTACAACCCTCAGAAACTTGAGTATTGAAGGAAACCTCTTCTCTGGCCCCATTCCTCCAGAGACTGGAAAGTTGATCAATTTAGAACAATTCGTTTTGTCATCAAATGCATTCACAGGAGAATTGCCAGTAGCACTTTCAAAGTTGACCAAGTTGACTGATTTGAGGATGAGTGACAATAATTTCTCTGGGAGAATACCTCATTTCATTAGCAAATGGACATCCATTGAAAGGCTGCACATGGAAGGTTGCTCACTTGAGGGGCCCATACCTTCTACCATTTCTGCCTTGACAAGCTTAAGTGATTTGAGGATAACTGACCTAAAAGGTAGAGGCTCCTCTTTCCCACCTTTGAGTAATATGGAATCCATAAAGACCCTGATATTGAGGAAATGCTTGATCAAAGGAGAGATCCCTGACTATATTGGGAATATGAACAAACTCAAAATGCTAGACTTGAGTTTTAATGACTTGACTGGAGAGATACCAGCCTCATTCGGCCAACTCCATAAAGTAGACTTCATGTATCTTCCTGGGAACAAGCTAACTGGGACTATACCTGGCTGGGTCCTTGGAAGCAATAGAAATGTTGATATTTCTGACAATAACTTTATCTGGGAGAGCTCAAGTCCAGTTGAATGTCCACGAGGGAGTGTAAATTTAGTGGAGAGCTATTCTTCTTATGTGGATAAACAAAACAAAATTCATGCGTGCTTGAAAAGGAACTTTCCATGCTCTGCTTCGCCCAGCCAATATTACTCCTTGCACATAAACTGTGGTGGAAGGGAAGCAAATGTAAGTGGTAAAATTTTTGATAACGACAGAGAACAAAGAGGTGCGTCAATGTTTTACTATGGTCGGAATTGGGCTCTCAGCAGCACCGGAACCTTCATGGACAATGATATTGACTCAGATCCCTACATTGTGACCAACACATCCAAACTTCTCAATGTCTCTGCCCTCGATTCAGAACTATACACAACAGCTCGTGTGTCTCCCCTTTCTCTAACATATTATGGACTCTGTCTGATGAATGGAAACTACACTGTTAAGCTCCACTTTGCAGAGATCGTGTTTATCAATGATAGATCATTTTACAGTCTCGGTAGGCGTGTATTTGACGTCTACATCCAGGGGAAGTTGGTCCTGAAGGACTTCAATATCGAGAAAGAAGCTGGTGGAACTGGTAAGCCCATTGTGAAGAAATTTAATGCTACCGTCACGGAACATACTTTGAAAATTCACTTTTACTACGCTGGAAAGGGGACTACTGGCATACCCACAAGAGGAATTTATGGACCTCTGATATCTGCTATATCAATAGATCCTAATTTTAAACCACCGACAGAGGATGCAAAGAGAATGTATGTTATAGAGGCGGCTGCCGTAGGAGCTGCTCTTATATTACTTGTTCTCGTGGTCCTGGGTATCATGTGGAGGAAGGGCTGGTTAGGTGGCAAAGACCCGGTGTATAAAGAGCTTAGAGGTATAGATCTGCAGAAGGGATTATTCACTTTAAGACAAATCAAAACAGCAACCAAAAACTTCAATGCTACTAATAAAATTGGAGAAGGTGGCTTTGGTTCTGTGTACAAGGGTCTACTATCAGATGGCACGGTAATTGCAGTAAAGCAGCTCTCCTCAAAATCTAGGCAAGGAAACCGTGAGTTTGTGAATGAGATAGGAATAATATCTGGACTCCAACATCCCAATCTTGTAAAGCTTTATGGATGTTGTGTGGAAGGGAACCAGTTGATACTGGTGTATGAGTATATGGAAAATAATTGTCTATCTCGTGCACTTTTTGGAAAAGATCCAGCCTGCAAAGCAAAACTGGACTGGACAACCAGGAAGAAAATTTGTCTTGGTATAGCTAGGGCTTTGGCTTATCTGCATGAAGAGTCCAGAATAAAAATCGTACATAGGGATATAAAGACTAGTAATGTGTTGCTAGACAAGGATTTTAATGCTAAGGTTTCAGATTTTGGTTTGGCAAGACTTAATGAAGACGATAATACCCATATCAGCACTCGAGTCGCTGGAACCATCGGTTATATGGCTCCTGAGTATGCTATGCGTGGTTATTTGACTGACAAAGCTGATGTTTATAGCTTTGGGGTAGTTGTGTTGGAAACAGTCAGTGGAAAGAGCAATACAAATTACAGGCCCAATGAAGAATTTGTTTACCTTCTTGATTGGGCCTATGTTTTGCAAGAGAGAGGAAGTCTACTGGACCTGGTTGATCCAGATATGGGTTCAAAATATTCAACCGAGGAGGCTATGCTTATGCTAAATGTGGCTCTCTTGTGTACCAATGCATCCCCCACACTTAGGCCAACAATGTCCCAAGTTGTGAGCATGCTCGAAGGCCAAACAGACATCCAAGATTTGCTTTCTGACCCAGGATATTCTGCAAATGGTTCCAAACACAGCTCCGTAAGAAATCACTTCTGGCAGACCCCAAGCCAAAGACAAAGCATGTCGACACGTAGTCTAGATACTGATTCCTCTAGTTCATACCTCGAGACAGAGGAAAGCTACCATCTTATCCCATACATCCACCTCCACTTCCAGTCTCTTTGCTTCGAATTTCTGGCAGCTTGGAGAACAATGGCGGCGATCGCAGTCCACCAGTTCGCTCAGTGTATCACTTGCCATGCTTGGAGCCCTGACAAATCCATGGTTGCATTTTGTCCCAATAATAACGAAGTGCACATCTATAAATTGTTTGAAGACAAATGGGAGAAGGTGCATATTCTTCAGAAGCATGACCAAATTATTTCTGGGATAGACTGGAGTACAAGATCAAACAGAATAGTTACTGCATCCCATGATCGGAATTCATATGTCTGGAACCTTGAAGGAACAGAATGGGTGCCAACTCTTGTTATCCTTAGGCTAAACCGTGCTGCTCTATGTGTTCAGTGGAGTCCAAAAGAAAACAAGTTTGCAGTTGGAAGTGGTGCCAAAACTGTTTGTGTATGCTACTATGAACAGGAGAACAACTGGTGGGTCAGTAAGCTCATCAGGAAAAAACATGATTCTTCAGTAACCAGTGTTTCTTGGCATCCCAATAATATTCTGCTTGCAACAACATCTACAGATGGAAAATGCCGAGTATTCTCCACCTTAATAAAAGGTGTAGATGCAAAGGATTCAAAAGTGGGCACTTCTTCAGATTCAAAATTTGGGGAGTTAATAATTCAGCTTGATCTCTCATTCTCTTGGTCGTTTGGCGTCAAGTGGTCACCAAGTGGCAATACTTTAGCTTATGTAGGTCATAATTCCATGATATATTTTGTTGATGATGTTGGCCCTTCTCCTTTGGCACAAAATGTCGCATTTCGTGATTTGCCCCTCCGTGATGTATTGTTCATTTCTGAGAGAATGGTAGTAGGTGTGGGTTTCGATTGTACTCCCATGGTTTTCGCTGCAGATGATAGAGGAATATGGAGTTTTGTCAGATATCTAGGGGAAAGGAAAGCAATATCTTCTGGATCAAAGTACGGCTCACAGTTCTCTGAAGCATTTGGGAAATTTTATGGCCAATCCAAGCAAGGAATGAACAATGACGCAGTTGAGAGTTCAAAAATACGTGGAGGTGTTCATGAGAACTGTATAAATTGTATCATGCCTCTTGGAGAGCGTAGCACACTGATCAAGCGTTTCAGCACATCAGGTTTGGACGGAAGAATCGTAATATGGGATTTGCAGAACCAGATAGATCTCTCTGAATGCTTATAA 4236 0.4223 MKLNLGCPNLLVLLFLLGSTSISIFLPQMALAATPKLNSDEVKALKEIGRKLGKKDWDFGMDPCSGKGSWNVSEERKGFANSVICDCSFNHNSSCHVVSIFLKSQNLSGTLPLEFSKLQYLKQLDLSRNIFTGSIPQRWATMHLVELSFMGNKLSGPFPKVLTNITTLRNLSIEGNLFSGPIPPETGKLINLEQFVLSSNAFTGELPVALSKLTKLTDLRMSDNNFSGRIPHFISKWTSIERLHMEGCSLEGPIPSTISALTSLSDLRITDLKGRGSSFPPLSNMESIKTLILRKCLIKGEIPDYIGNMNKLKMLDLSFNDLTGEIPASFGQLHKVDFMYLPGNKLTGTIPGWVLGSNRNVDISDNNFIWESSSPVECPRGSVNLVESYSSYVDKQNKIHACLKRNFPCSASPSQYYSLHINCGGREANVSGKIFDNDREQRGASMFYYGRNWALSSTGTFMDNDIDSDPYIVTNTSKLLNVSALDSELYTTARVSPLSLTYYGLCLMNGNYTVKLHFAEIVFINDRSFYSLGRRVFDVYIQGKLVLKDFNIEKEAGGTGKPIVKKFNATVTEHTLKIHFYYAGKGTTGIPTRGIYGPLISAISIDPNFKPPTEDAKRMYVIEAAAVGAALILLVLVVLGIMWRKGWLGGKDPVYKELRGIDLQKGLFTLRQIKTATKNFNATNKIGEGGFGSVYKGLLSDGTVIAVKQLSSKSRQGNREFVNEIGIISGLQHPNLVKLYGCCVEGNQLILVYEYMENNCLSRALFGKDPACKAKLDWTTRKKICLGIARALAYLHEESRIKIVHRDIKTSNVLLDKDFNAKVSDFGLARLNEDDNTHISTRVAGTIGYMAPEYAMRGYLTDKADVYSFGVVVLETVSGKSNTNYRPNEEFVYLLDWAYVLQERGSLLDLVDPDMGSKYSTEEAMLMLNVALLCTNASPTLRPTMSQVVSMLEGQTDIQDLLSDPGYSANGSKHSSVRNHFWQTPSQRQSMSTRSLDTDSSSSYLETEESYHLIPYIHLHFQSLCFEFLAAWRTMAAIAVHQFAQCITCHAWSPDKSMVAFCPNNNEVHIYKLFEDKWEKVHILQKHDQIISGIDWSTRSNRIVTASHDRNSYVWNLEGTEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCVCYYEQENNWWVSKLIRKKHDSSVTSVSWHPNNILLATTSTDGKCRVFSTLIKGVDAKDSKVGTSSDSKFGELIIQLDLSFSWSFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFISERMVVGVGFDCTPMVFAADDRGIWSFVRYLGERKAISSGSKYGSQFSEAFGKFYGQSKQGMNNDAVESSKIRGGVHENCINCIMPLGERSTLIKRFSTSGLDGRIVIWDLQNQIDLSECL 1411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0460 1411 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 237 384 - -
Dere05g0460 1411 Gene3D - 415 607 - -
Dere05g0460 1411 Gene3D Ribonuclease Inhibitor 210 401 IPR032675 -
Dere05g0460 1411 FunFam Putative LRR receptor-like serine/threonine-protein kinase 756 964 - -
Dere05g0460 1411 SUPERFAMILY Protein kinase-like (PK-like) 666 985 IPR011009 -
Dere05g0460 1411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Dere05g0460 1411 Pfam WD domain, G-beta repeat 1078 1116 IPR001680 GO:0005515
Dere05g0460 1411 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515
Dere05g0460 1411 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 43 206 - -
Dere05g0460 1411 Gene3D - 1038 1409 IPR015943 GO:0005515
Dere05g0460 1411 Gene3D Phosphorylase Kinase; domain 1 654 755 - -
Dere05g0460 1411 ProSitePatterns Protein kinases ATP-binding region signature. 686 708 IPR017441 GO:0005524
Dere05g0460 1411 SUPERFAMILY L domain-like 92 351 - -
Dere05g0460 1411 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 416 608 - -
Dere05g0460 1411 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 20 990 - -
Dere05g0460 1411 Pfam Malectin domain 418 603 IPR021720 -
Dere05g0460 1411 ProSiteProfiles Protein kinase domain profile. 680 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0460 1411 Pfam Anaphase-promoting complex subunit 4 WD40 domain 1138 1206 IPR024977 -
Dere05g0460 1411 Gene3D Transferase(Phosphotransferase) domain 1 756 964 - -
Dere05g0460 1411 CDD STKc_IRAK 686 954 - -
Dere05g0460 1411 Pfam Protein tyrosine and serine/threonine kinase 682 952 IPR001245 GO:0004672|GO:0006468
Dere05g0460 1411 FunFam Actin-related protein 2/3 complex subunit 1038 1408 - -
Dere05g0460 1411 Gene3D Ribonuclease Inhibitor 43 209 IPR032675 -
Dere05g0460 1411 SMART serkin_6 680 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0460 1411 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 650 755 - -
Dere05g0460 1411 ProSitePatterns Trp-Asp (WD) repeats signature. 1103 1117 IPR019775 -
Dere05g0460 1411 SMART WD40_4 1034 1072 IPR001680 GO:0005515
Dere05g0460 1411 SMART WD40_4 1121 1160 IPR001680 GO:0005515
Dere05g0460 1411 SMART WD40_4 1355 1400 IPR001680 GO:0005515
Dere05g0460 1411 SMART WD40_4 1227 1266 IPR001680 GO:0005515
Dere05g0460 1411 SMART WD40_4 1077 1116 IPR001680 GO:0005515
Dere05g0460 1411 SMART WD40_4 1166 1206 IPR001680 GO:0005515
Dere05g0460 1411 SUPERFAMILY WD40 repeat-like 1040 1405 IPR036322 GO:0005515
Dere05g0460 1411 ProSiteProfiles Trp-Asp (WD) repeats profile. 1084 1125 IPR001680 GO:0005515
Dere05g0460 1411 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1084 1118 - -
Dere05g0460 1411 ProSiteProfiles Trp-Asp (WD) repeats profile. 1174 1206 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0460 Dere-ChrDere05 7018431 7050703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0460 219 1014 Receptor kinase-like Gene Family AT1G07650 65.423 0.0 1036
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dere05g0460 PK_Tyr_Ser-Thr 2.9e-48 CL0016