LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g0436	ATGGAATTTTTCTCTGAATATGGTGATGCCAACCGGTACAAGATTCAAGAAGTCATTGGGAAAGGAAGTTATGGTGTTGTTTGTTCAGCAATTGACAGTCATACTGGAGAAAAAGTGGCAATAAAAAAGATACATGACATCTTTGAGCACTTATCTGATGCTGCACGCATCCTTCGCGAGATAAAGCTGCTTAGACTTCTACGGCATCCTGATATTGTTGAAATCAAACACATTATGCTTCCTCCTTCTAGGAAGGACTTTAAAGATATTTATGTCGTCTTTGAGCTCATGGAGTCCGATCTTCATCAAGTCATTAAAGCCAATGATGACTTAACTAAAGAGCACTATCAATTTTTTCTTTACCAGTTACTACGAGCATTGAAGTATATTCACTCTGCAAATGTCTACCATCGAGATTTGAAACCAAAGAATATACTGGCCAATGCAAACTGTAAACTTAAAATCTGTGATTTTGGGTTGGCTAGAGTTTCCTTCAATGACACTCCAACAACTATCTTTTGGACGGATTATGTTGCCACCAGGTGGTATAGAGCTCCAGAGCTATGTGGGTCATTTTACTCAAGGGTATGGGTTCATCCTGATTCTTTTAAAAGGCAATACAATAATGGACAGTCTTGA	639	0.3834	MEFFSEYGDANRYKIQEVIGKGSYGVVCSAIDSHTGEKVAIKKIHDIFEHLSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRKDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHSANVYHRDLKPKNILANANCKLKICDFGLARVSFNDTPTTIFWTDYVATRWYRAPELCGSFYSRVWVHPDSFKRQYNNGQS	212

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g0436	212	Gene3D	Transferase(Phosphotransferase) domain 1	97	192	-	-
	Dere05g0436	212	Gene3D	Phosphorylase Kinase; domain 1	11	96	-	-
	Dere05g0436	212	ProSitePatterns	Protein kinases ATP-binding region signature.	19	43	IPR017441	GO:0005524
	Dere05g0436	212	Pfam	Protein kinase domain	13	189	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere05g0436	212	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	12	193	-	-
	Dere05g0436	212	SMART	serkin_6	13	208	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere05g0436	212	ProSiteProfiles	Protein kinase domain profile.	13	212	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere05g0436	212	ProSitePatterns	MAP kinase signature.	48	151	IPR003527	GO:0004707\|GO:0005524\|GO:0006468
	Dere05g0436	212	FunFam	Mitogen-activated protein kinase	97	197	-	-
	Dere05g0436	212	SUPERFAMILY	Protein kinase-like (PK-like)	9	192	IPR011009	-
	Dere05g0436	212	FunFam	Mitogen-activated protein kinase	3	107	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g0436	Dere-ChrDere05	6641938	6643084	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere05g0436	1	195	MAP Kinase Gene Family	AT2G42880	93.846	6.66e-139	395

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_MAPK	Dere05g0436		Pkinase	1.6e-48	CL0016