Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dere05g0435 | ATGGAGTCAGAGGACAAGTATTCTTTGGATTCTAAGTCAGCCTGTGGTGCAGAAGGTCCATCTGGGATTTCTCCACTTAATGTTGCTAAAAAAGTGGAAAGCAGTGCATGGGGGATACCACATGCATGTAGCGATGCTAGCTTGTTTTCTAGTTCTCTGCCTGTTCTTCCGCATGAAAAGTTGAATTTTCCTGATTCAGAACATTATGGCCAACCTTTTGTTGATAACATGCCAATATTTAATGAAGTCCACAAAGGAGTTGAGGGATACGATCCACTTGAAGATGTTAAAACCAATGCAATTGGAAACATACTTCCTGATGATGAAGAAGAGCTTTTAGCTGGAATAATGGATGATTTTGACCTGAGTAGATTGCCCAGCCAACTGGGGGATCTAGATGAAAATGATTTGTTTGGTAGTGGAGGAGGGTTCGAAATGGATTTTGAGCCCCAAGAGAGTCTTAATATTGCTATGTCAAAAGTAAGCATCTCTGATGCAGTTGCTTCAAATGGTATTGGCCATTATGCACTTCCAAATAGCATGGGACCTGTGGCTGGGGAGCACCCCTACGGGGAGCATCCATCAAGAACATTATTTGTCAGAAACATCAACAGTAATGTTGAGGATTCAGAATTAAGATTACTATTTGAGCAATATGGGGATATTAGAACCTTGTACACTGCATGCAAGCATAGGGGTTTTGTGATGATATCTTACTATGATATTCGAGATGCTCGCACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGACATTCATTTTTCAATTCCCAAGGACAACCCCTCAGAAAAGGATATTAATCAAGGAACTCTTGTCGTGTTCAATTTGGATCCATCAGTGTCAAATGATGATCTCCGTCTAATATTTGGGGCTTATGGGGAGGTCAAAGAGATAAGGGAAACACCACATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCTGCTGACGCAGCACTAAAAGCATTGAATCGGAGTGATATTGCTGGGAAACGCATCAAACTTGAACCTAGCCGCCCTGGTGGAGCACGACGAAATTTGATGCAACAACTGAGTCAAGAGCTGGACCTAGATGAAGCACGGACTTTCAGACATCAAGCAGTTTCACCAATGGCCAATTCTCCTCCTGGTAACTGGGCACAATTTGGCAGTCCAGTTGAACATAATTATTCAAGTTCTTTTAGCAAGCCTCCTGCTTTGTGTCATGCTGGCCCTGTGAATAGCAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCTCATGCATCAAACTCTACAAAGATTGCACCAATTGGCAAGGACTCAGGAAGGGTTAATAATTCAAATCAGATATTTACAAACTCAGGGACAACACAAGGATCAGCTTTTCAGAATTCACTGTCCTTTTCTGAGCAAAAAGCAAATGCAAGTTCTAGATCCATTTCTACTTTTGGTGAATCAAGCTCAGGTTCATCAAGCATTGGAACACTATCTGGTCCTCAATTCCTTTGGGGAAGTCCAACTACTTCTTACACAGAGCATTCGAATACTTCTGCCTGGTCTTCATCTTCTTCTGGGCTCCCATTTACATCTAGTGGTGAGAAGCAGGGTTTCCCATATACTAGTCGACATGCTTCTTTTCTTGGTTCCTGCTCCCATCATCACGTGGGATCTGCTCCATCTGGCCTTCCTCTTGATAGGCATTTTAGCTACTTTCCAGAGTCACCAGAAGCTTCTTTCATGAGTCCAGCTGCATTTGGGAGTTTAAATCACAGTGATGGGAATTTTATGAACATGGGTGCTCGTGCAGCTGCAGGGGTAATTGGCCTTTCAGGAAATACAACTGAAATTAATTCACCGAATTTCAGATTGATGTCATTGCCTAGGCATGGTTCCTTGTTTCTTGGAAATGGTTCTTATCCTGGACCAGGTACAAATATGGAGGGGTTTGGCGAACGTGGTCGGAGTCGGCGACCTGAAAATAATGGGACCCAGATTGATAGCAAGAAGCAGTATCAACTTGATCTGGACAAAATTATCAGTGGGGAAGATACAAGGACTACTTTGATGATTAAAAACATTCCTAATAAGTACACTTCAAAGATGCTGCTATCTGCAATTGATGAGAACCACCGGGGTACTTATGACTTTCTGTACTTGCCAATTGACTTTAAGAACAAGTGTAATGTGGGTTATGCTTTCATCAATATGGCGTCTCCTTCGCATATCATTTCCTTCTATAAGGAATTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCATCACTGGCATATGCACGGATCCAAGGAAAGGCTGCGCTTGTGACACACTTTCAGAATTCAAGCTTAATGAATGAGGATAAGCGGTGCAGGCCAATTCTTTTTCATTCAGAAGGCCAAGAGACTGTTGACCAGGAACCTTTCTTATCCAGCAATCTGAATATATGCATCCGTCAACCAGATGGGTCATACTCAGGTGATTTGTTGGAGAGCCCAAAGGGCGATTTGGATGACAAGTTATAG | 2553 | 0.4211 | MESEDKYSLDSKSACGAEGPSGISPLNVAKKVESSAWGIPHACSDASLFSSSLPVLPHEKLNFPDSEHYGQPFVDNMPIFNEVHKGVEGYDPLEDVKTNAIGNILPDDEEELLAGIMDDFDLSRLPSQLGDLDENDLFGSGGGFEMDFEPQESLNIAMSKVSISDAVASNGIGHYALPNSMGPVAGEHPYGEHPSRTLFVRNINSNVEDSELRLLFEQYGDIRTLYTACKHRGFVMISYYDIRDARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRLIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELDLDEARTFRHQAVSPMANSPPGNWAQFGSPVEHNYSSSFSKPPALCHAGPVNSNHLSGLAAILSPHASNSTKIAPIGKDSGRVNNSNQIFTNSGTTQGSAFQNSLSFSEQKANASSRSISTFGESSSGSSSIGTLSGPQFLWGSPTTSYTEHSNTSAWSSSSSGLPFTSSGEKQGFPYTSRHASFLGSCSHHHVGSAPSGLPLDRHFSYFPESPEASFMSPAAFGSLNHSDGNFMNMGARAAAGVIGLSGNTTEINSPNFRLMSLPRHGSLFLGNGSYPGPGTNMEGFGERGRSRRPENNGTQIDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLSAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMASPSHIISFYKEFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQETVDQEPFLSSNLNICIRQPDGSYSGDLLESPKGDLDDKL | 850 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dere05g0435 | 850 | Gene3D | - | 185 | 279 | IPR012677 | - | |
Dere05g0435 | 850 | Gene3D | - | 687 | 782 | IPR012677 | - | |
Dere05g0435 | 850 | Pfam | RNA recognition motif 2 | 693 | 789 | IPR007201 | - | |
Dere05g0435 | 850 | SUPERFAMILY | RNA-binding domain, RBD | 695 | 780 | IPR035979 | GO:0003676 | |
Dere05g0435 | 850 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 196 | 269 | IPR000504 | GO:0003723 | |
Dere05g0435 | 850 | SMART | rrm1_1 | 695 | 771 | IPR000504 | GO:0003723 | |
Dere05g0435 | 850 | SMART | rrm1_1 | 197 | 265 | IPR000504 | GO:0003723 | |
Dere05g0435 | 850 | SMART | rrm1_1 | 282 | 350 | IPR000504 | GO:0003723 | |
Dere05g0435 | 850 | CDD | RRM1_MEI2_like | 195 | 271 | IPR034453 | - | |
Dere05g0435 | 850 | Gene3D | - | 280 | 376 | IPR012677 | - | |
Dere05g0435 | 850 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Dere05g0435 | 850 | SUPERFAMILY | RNA-binding domain, RBD | 193 | 356 | IPR035979 | GO:0003676 | |
Dere05g0435 | 850 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 281 | 354 | IPR000504 | GO:0003723 | |
Dere05g0435 | 850 | CDD | RRM3_MEI2_like | 696 | 781 | IPR034454 | - | |
Dere05g0435 | 850 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 283 | 348 | IPR000504 | GO:0003723 | |
Dere05g0435 | 850 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 198 | 262 | IPR000504 | GO:0003723 | |
Dere05g0435 | 850 | MobiDBLite | consensus disorder prediction | 442 | 464 | - | - | |
Dere05g0435 | 850 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 46 | 811 | - | - | |
Dere05g0435 | 850 | FunFam | MEI2-like protein 5 isoform 2 | 185 | 279 | - | - | |
Dere05g0435 | 850 | CDD | RRM2_MEI2_like | 280 | 350 | - | - | |
Dere05g0435 | 850 | FunFam | Protein MEI2-like 1 | 280 | 375 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dere05g0435 | Dere-ChrDere05 | 6613025 | 6619452 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dere05g0435 | 193 | 347 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 26.829 | 1.90e-10 | 62.8 |