Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0435 ATGGAGTCAGAGGACAAGTATTCTTTGGATTCTAAGTCAGCCTGTGGTGCAGAAGGTCCATCTGGGATTTCTCCACTTAATGTTGCTAAAAAAGTGGAAAGCAGTGCATGGGGGATACCACATGCATGTAGCGATGCTAGCTTGTTTTCTAGTTCTCTGCCTGTTCTTCCGCATGAAAAGTTGAATTTTCCTGATTCAGAACATTATGGCCAACCTTTTGTTGATAACATGCCAATATTTAATGAAGTCCACAAAGGAGTTGAGGGATACGATCCACTTGAAGATGTTAAAACCAATGCAATTGGAAACATACTTCCTGATGATGAAGAAGAGCTTTTAGCTGGAATAATGGATGATTTTGACCTGAGTAGATTGCCCAGCCAACTGGGGGATCTAGATGAAAATGATTTGTTTGGTAGTGGAGGAGGGTTCGAAATGGATTTTGAGCCCCAAGAGAGTCTTAATATTGCTATGTCAAAAGTAAGCATCTCTGATGCAGTTGCTTCAAATGGTATTGGCCATTATGCACTTCCAAATAGCATGGGACCTGTGGCTGGGGAGCACCCCTACGGGGAGCATCCATCAAGAACATTATTTGTCAGAAACATCAACAGTAATGTTGAGGATTCAGAATTAAGATTACTATTTGAGCAATATGGGGATATTAGAACCTTGTACACTGCATGCAAGCATAGGGGTTTTGTGATGATATCTTACTATGATATTCGAGATGCTCGCACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGACATTCATTTTTCAATTCCCAAGGACAACCCCTCAGAAAAGGATATTAATCAAGGAACTCTTGTCGTGTTCAATTTGGATCCATCAGTGTCAAATGATGATCTCCGTCTAATATTTGGGGCTTATGGGGAGGTCAAAGAGATAAGGGAAACACCACATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCTGCTGACGCAGCACTAAAAGCATTGAATCGGAGTGATATTGCTGGGAAACGCATCAAACTTGAACCTAGCCGCCCTGGTGGAGCACGACGAAATTTGATGCAACAACTGAGTCAAGAGCTGGACCTAGATGAAGCACGGACTTTCAGACATCAAGCAGTTTCACCAATGGCCAATTCTCCTCCTGGTAACTGGGCACAATTTGGCAGTCCAGTTGAACATAATTATTCAAGTTCTTTTAGCAAGCCTCCTGCTTTGTGTCATGCTGGCCCTGTGAATAGCAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCTCATGCATCAAACTCTACAAAGATTGCACCAATTGGCAAGGACTCAGGAAGGGTTAATAATTCAAATCAGATATTTACAAACTCAGGGACAACACAAGGATCAGCTTTTCAGAATTCACTGTCCTTTTCTGAGCAAAAAGCAAATGCAAGTTCTAGATCCATTTCTACTTTTGGTGAATCAAGCTCAGGTTCATCAAGCATTGGAACACTATCTGGTCCTCAATTCCTTTGGGGAAGTCCAACTACTTCTTACACAGAGCATTCGAATACTTCTGCCTGGTCTTCATCTTCTTCTGGGCTCCCATTTACATCTAGTGGTGAGAAGCAGGGTTTCCCATATACTAGTCGACATGCTTCTTTTCTTGGTTCCTGCTCCCATCATCACGTGGGATCTGCTCCATCTGGCCTTCCTCTTGATAGGCATTTTAGCTACTTTCCAGAGTCACCAGAAGCTTCTTTCATGAGTCCAGCTGCATTTGGGAGTTTAAATCACAGTGATGGGAATTTTATGAACATGGGTGCTCGTGCAGCTGCAGGGGTAATTGGCCTTTCAGGAAATACAACTGAAATTAATTCACCGAATTTCAGATTGATGTCATTGCCTAGGCATGGTTCCTTGTTTCTTGGAAATGGTTCTTATCCTGGACCAGGTACAAATATGGAGGGGTTTGGCGAACGTGGTCGGAGTCGGCGACCTGAAAATAATGGGACCCAGATTGATAGCAAGAAGCAGTATCAACTTGATCTGGACAAAATTATCAGTGGGGAAGATACAAGGACTACTTTGATGATTAAAAACATTCCTAATAAGTACACTTCAAAGATGCTGCTATCTGCAATTGATGAGAACCACCGGGGTACTTATGACTTTCTGTACTTGCCAATTGACTTTAAGAACAAGTGTAATGTGGGTTATGCTTTCATCAATATGGCGTCTCCTTCGCATATCATTTCCTTCTATAAGGAATTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCATCACTGGCATATGCACGGATCCAAGGAAAGGCTGCGCTTGTGACACACTTTCAGAATTCAAGCTTAATGAATGAGGATAAGCGGTGCAGGCCAATTCTTTTTCATTCAGAAGGCCAAGAGACTGTTGACCAGGAACCTTTCTTATCCAGCAATCTGAATATATGCATCCGTCAACCAGATGGGTCATACTCAGGTGATTTGTTGGAGAGCCCAAAGGGCGATTTGGATGACAAGTTATAG 2553 0.4211 MESEDKYSLDSKSACGAEGPSGISPLNVAKKVESSAWGIPHACSDASLFSSSLPVLPHEKLNFPDSEHYGQPFVDNMPIFNEVHKGVEGYDPLEDVKTNAIGNILPDDEEELLAGIMDDFDLSRLPSQLGDLDENDLFGSGGGFEMDFEPQESLNIAMSKVSISDAVASNGIGHYALPNSMGPVAGEHPYGEHPSRTLFVRNINSNVEDSELRLLFEQYGDIRTLYTACKHRGFVMISYYDIRDARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRLIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELDLDEARTFRHQAVSPMANSPPGNWAQFGSPVEHNYSSSFSKPPALCHAGPVNSNHLSGLAAILSPHASNSTKIAPIGKDSGRVNNSNQIFTNSGTTQGSAFQNSLSFSEQKANASSRSISTFGESSSGSSSIGTLSGPQFLWGSPTTSYTEHSNTSAWSSSSSGLPFTSSGEKQGFPYTSRHASFLGSCSHHHVGSAPSGLPLDRHFSYFPESPEASFMSPAAFGSLNHSDGNFMNMGARAAAGVIGLSGNTTEINSPNFRLMSLPRHGSLFLGNGSYPGPGTNMEGFGERGRSRRPENNGTQIDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLSAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMASPSHIISFYKEFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQETVDQEPFLSSNLNICIRQPDGSYSGDLLESPKGDLDDKL 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0435 850 Gene3D - 185 279 IPR012677 -
Dere05g0435 850 Gene3D - 687 782 IPR012677 -
Dere05g0435 850 Pfam RNA recognition motif 2 693 789 IPR007201 -
Dere05g0435 850 SUPERFAMILY RNA-binding domain, RBD 695 780 IPR035979 GO:0003676
Dere05g0435 850 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 269 IPR000504 GO:0003723
Dere05g0435 850 SMART rrm1_1 695 771 IPR000504 GO:0003723
Dere05g0435 850 SMART rrm1_1 197 265 IPR000504 GO:0003723
Dere05g0435 850 SMART rrm1_1 282 350 IPR000504 GO:0003723
Dere05g0435 850 CDD RRM1_MEI2_like 195 271 IPR034453 -
Dere05g0435 850 Gene3D - 280 376 IPR012677 -
Dere05g0435 850 MobiDBLite consensus disorder prediction 1 24 - -
Dere05g0435 850 SUPERFAMILY RNA-binding domain, RBD 193 356 IPR035979 GO:0003676
Dere05g0435 850 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 354 IPR000504 GO:0003723
Dere05g0435 850 CDD RRM3_MEI2_like 696 781 IPR034454 -
Dere05g0435 850 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 348 IPR000504 GO:0003723
Dere05g0435 850 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 262 IPR000504 GO:0003723
Dere05g0435 850 MobiDBLite consensus disorder prediction 442 464 - -
Dere05g0435 850 PANTHER RNA RECOGNITION MOTIF-CONTAINING 46 811 - -
Dere05g0435 850 FunFam MEI2-like protein 5 isoform 2 185 279 - -
Dere05g0435 850 CDD RRM2_MEI2_like 280 350 - -
Dere05g0435 850 FunFam Protein MEI2-like 1 280 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0435 Dere-ChrDere05 6613025 6619452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0435 193 347 Eukaryotic Initiation Factors Gene Family AT1G71770 26.829 1.90e-10 62.8