Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0417 ATGCAGTTCTTTTCGACTTTCGAGCCAACCAAGCAGGAAACGTTGAGGAAATTTCCGTGTGAGAAGAAGCAGACCAGGATTTTCTCTGGGACCAAGCAAGCAGATACCATTACTATGCTTTTGAAGGTTTCTCACGTTCTGGTTCTACTGGTAATATATTCCCGCGCCGTGGAGGCCAATTCCGGGAATCACAATCACGACTGCCTCAACAAAAATGGCTCTTCTCTCGCTGCCATTAAAATGCCTGGTCATCCAAACTTCAATGCTGTCTCTTCTTCTGCAAATACTGCCTGTAGCTTCTCAAAATCTGAGAAACTTGGGCATTCTGGAGCAACCATGACATCAGATGAAGATGCTGATGATGGTTATGGTGATCAAGAAGGGAAGGCTTTTCCTGCAAAAAAACCACACGAGCAACTGGTGAAGCTTGATTTGAAACACCGGCCTGTAAGCGAAGATGCTGAGTCAAAAAAATCTGTGATTGATTTCACAGTTCGGGACTTGACCAGAATTCAGACCCTTCATCGAAGGGTCGTAGAGAAGAAGAACCAAAACACTGTTTCAAGGCTGCAGAAAACACAGTACCAATCAAAGCAGCATCTATACAAGCAGGTTGTGGCTCCGGCACCAGCCCCGACAACTGTGCCGGAATATTTTGCAAATGGCCATTCCAGCCAGCTTGTGGCAACCTTGGAGTCAGGGGTCAGTCTTGGCTCTGGAGAGTACTTCATGGATGTGTTTGTGGGTACACCTCCCAAACATTTCTCTCTGATACTTGATACTGGTAGTGATCTGAATTGGATTCAATGTGTTCCTTGTTATGCTTGTTTTGAGCAAAATGGACCTCACTATGATCCTAAAGATTCTACTTCCTTTAAGAACATAAGCTGCCATGATCTACGATGCCAATTAGTGTCATCACCGGATCCACCTCAGCCTTGCAAGGCTGAGAACCTGAGCTGCCCTTACTTCTACTGGTATGGAGATAGCTCCAATACAACTGGGGACTTTGCACTTGAGACTTTTACAGTTAATCTCACCACGCCTTCCGGGAAGTCTGAGATCCGGCGTGTGGAGAATGTAATGTTTGGCTGTGGACATTGGAATAGAGGCCTCTTCCATGGGGCTGCTGGGTTGCTAGGATTGGGAAGAGGGCCTTTATCATTTGCTTCTCAGCTGCAATCTCTTTATGGTCATTCCTTTTCCTATTGCCTTGTGGATAGAAACAGTAACATTAGCAGCAAACTGATATTTGGTGAAGACAAGCAGCTTCTCAGCCACCCAAACTTGAATTTCACTTCATTTGTGGGTGGCAAAGAAAACCCAGTTGATACATTTTACTATGTCCAGATAAAATCTGTCATGGTTGGTGGTGAGGTACTAAAGATACCAGAGGAAACTTGGCTTGTGTCCGCAGAAGGTGCTGGTGGAACTATCGTTGATTCAGGCACTACTCTAACTTATTTTGCAGAGCCTGCTTATCAGATTATAAAGGAGGCTTTCATGAAGAAGATCAAGGCCTACCTTGTTGTTGAAGGCTTTTCTCCATTAAAGCCATGTTATAATGTTTCTGGGGTGAAAGAAATTGAGCTTCCTGATTTTGGGATCCTGTTTGCAGATGGAGCTGTATGGGATTTCCCTGTAGAAAATTACTTCATTGAGATTGAACCAGAGGATGTTGTTTGTTTGGCAATTCTGGGCACTCCTCGTTCCGCTCTTTCCATAATTGGAAACTATCAGCAGCAGAACTTTCACATCCTCTATGATATGAAGAATTCCAGACTAGGATATGCACCAGTGAACTGTGCTGATGGTTTTTCCTGTCCTCGTTCTTCTGCAGAGCGCCGTAGAGACCGAAACCGAAGACACGCCATAGGCAGTTGCTACCTCTCCGTGCATCTGTCGTCCCAAATGGTTTCCTTCAGGTTTCACCAGTACCAGGTGGTGGGCAGGGCTCTTCCCACTGAAACAGATGAACACCCCAAGATCTACCGTATGAAGCTTTGGGCTACCAATGAGGTCCGCGCCAAATCCAAGTTCTGGTATTTCTTGAGGAAGCTGAAGAAGGTCAAGAAAAGTAACGGGCAAGTGCTAGCCATCAACGAGATTTTTGAGAAAAACCCTACCAAGATTAAGAATTATGGAATTTGGCTCCGATATCAGAGTCGAACTGGCTATCACAACATGTACAAGGAATATCGGGATACTACTCTCAATGGTGCTGTTGAACAAATGTACAATGAAATGGCATCACGTCATCGGGTGAGGTTTCCATGCATCCAGATCATCAAAACTGCCACCATCCCAGCAAAGTTGTGCAAAAGAGAGAGCACCAAGCAGTTCCACAATTCTAAAATCAAGTTTCCATTGGTGTTCAAGAAGGTTAGGCCACCAAGTAGAAAGCTGAAGACAACATACAAGGCATCTAGGCCAAACTTGTTTATGTGA 2448 0.4485 MQFFSTFEPTKQETLRKFPCEKKQTRIFSGTKQADTITMLLKVSHVLVLLVIYSRAVEANSGNHNHDCLNKNGSSLAAIKMPGHPNFNAVSSSANTACSFSKSEKLGHSGATMTSDEDADDGYGDQEGKAFPAKKPHEQLVKLDLKHRPVSEDAESKKSVIDFTVRDLTRIQTLHRRVVEKKNQNTVSRLQKTQYQSKQHLYKQVVAPAPAPTTVPEYFANGHSSQLVATLESGVSLGSGEYFMDVFVGTPPKHFSLILDTGSDLNWIQCVPCYACFEQNGPHYDPKDSTSFKNISCHDLRCQLVSSPDPPQPCKAENLSCPYFYWYGDSSNTTGDFALETFTVNLTTPSGKSEIRRVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFASQLQSLYGHSFSYCLVDRNSNISSKLIFGEDKQLLSHPNLNFTSFVGGKENPVDTFYYVQIKSVMVGGEVLKIPEETWLVSAEGAGGTIVDSGTTLTYFAEPAYQIIKEAFMKKIKAYLVVEGFSPLKPCYNVSGVKEIELPDFGILFADGAVWDFPVENYFIEIEPEDVVCLAILGTPRSALSIIGNYQQQNFHILYDMKNSRLGYAPVNCADGFSCPRSSAERRRDRNRRHAIGSCYLSVHLSSQMVSFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRFPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0417 815 Pfam Xylanase inhibitor C-terminal 447 598 IPR032799 -
Dere05g0417 815 SUPERFAMILY RplX-like 708 783 - -
Dere05g0417 815 Hamap 50S ribosomal protein L18Ae [rpl18a]. 643 706 IPR028877 -
Dere05g0417 815 FunFam 60S ribosomal protein L18a 709 784 - -
Dere05g0417 815 FunFam Eukaryotic aspartyl protease family protein 218 420 - -
Dere05g0417 815 FunFam 60S ribosomal protein L18a 638 708 - -
Dere05g0417 815 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 257 268 IPR001969 GO:0004190|GO:0006508
Dere05g0417 815 FunFam Aspartyl protease family protein 421 605 - -
Dere05g0417 815 Pfam Xylanase inhibitor N-terminal 242 419 IPR032861 -
Dere05g0417 815 ProSiteProfiles Peptidase family A1 domain profile. 242 598 IPR033121 -
Dere05g0417 815 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 644 765 IPR023573 GO:0003735|GO:0005840|GO:0006412
Dere05g0417 815 Gene3D - 709 784 - -
Dere05g0417 815 Gene3D Acid Proteases 220 419 IPR021109 -
Dere05g0417 815 CDD pepsin_A_like_plant 241 602 IPR034161 -
Dere05g0417 815 Gene3D Acid Proteases 420 613 IPR021109 -
Dere05g0417 815 PRINTS Pepsin (A1) aspartic protease family signature 248 268 IPR001461 GO:0004190|GO:0006508
Dere05g0417 815 PRINTS Pepsin (A1) aspartic protease family signature 574 589 IPR001461 GO:0004190|GO:0006508
Dere05g0417 815 PRINTS Pepsin (A1) aspartic protease family signature 478 489 IPR001461 GO:0004190|GO:0006508
Dere05g0417 815 Gene3D - 632 708 - -
Dere05g0417 815 PANTHER 60S RIBOSOMAL PROTEIN L18A 640 814 IPR028877 -
Dere05g0417 815 SUPERFAMILY Acid proteases 234 607 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0417 Dere-ChrDere05 6350721 6356788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0417 637 815 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 91.620 5.01e-117 351