Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0409 ATGATCATGTTATTGTGTTATATCATATATGTCATTTCCAATATGATATTATACAATTTAAGTGAATTCGATAGTGGTGTTCCTTGTGTTTCAGACACCTGTGGTCACAGCTTTTGCTTGAAGTGCTTCGAGAAATGGATTGTAGAAGGGAAGCGTCATTGTGCAGATTGTGGGAATAAAATCCCTTCTAAGATGGCAAGCCAACCACGAATCAACTCACAATTTGCTATCAGATTGTCAAGAGTGTCAGATTCAATTAGCGTTTATGATGATCATTTTATGCAGAATCATACTATATCCAAAAAAGATGGTGGAGATTTTTGTGGTGGGAAGATCTTGGTGACAGTAGGACATGATCACTTTGGGCCACTTCTTGAAGAGAATGACCCTGTGAGGAATTAG 402 0.3781 MIMLLCYIIYVISNMILYNLSEFDSGVPCVSDTCGHSFCLKCFEKWIVEGKRHCADCGNKIPSKMASQPRINSQFAIRLSRVSDSISVYDDHFMQNHTISKKDGGDFCGGKILVTVGHDHFGPLLEENDPVRN 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0409 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 103 IPR013083 -
Dere05g0409 133 Pfam Zinc finger, C3HC4 type (RING finger) 30 57 IPR018957 GO:0046872
Dere05g0409 133 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 31 133 IPR045134 -
Dere05g0409 133 SUPERFAMILY RING/U-box 22 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0409 Dere-ChrDere05 6103773 6104174 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0409 30 132 C2H2 Transcription Factor Family AT5G39550 38.333 2.00e-19 81.3