Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0408 ATGCGAGTAGAGGATTTGTGGAATGCTAAAGAGCCACAGTTAAGTTCTAACGAGAAGCTCAATGCTTGCTTTGAAAGCATCCCGGTGTCTACTCTCCCTTCTGCTCCTACAAATAAAGTGGTTGAGATAAAATCAGATGCCACCCTACCGAAATCTGTTGAAATACTGGCACGCAACAATATCTTGAGCAAAGAATTTTTCCATTTGGAGCAATTTGATTATGAAGGACTTCACCTTGCTGAAAGTACCTCTAGCCAACTGCTAACAGATCAATTATTCGAACATCCTTGCAAAGGAGGAGAGCCAATGATGGAGAATGCAGTGCACTCAGTTTTGTCTTGCTATGAAGAAAAAATGTCTACAAAGATAGATGGAAAACCTTGTCAACCTGCTGATACCAAGAAGCTTCCAATGGCATACGTGAAAAGCACTCTCGAGCCAAGTTCGTTGTCTTGTTGAAGTGAGAGATTGGGCAGATTGAGAGATGCGCAGAGAAGAGATACAGAACAGGGTGCTGACTCTGTAATGGATGCTATAGAGTTTGTACTCCTGAAGTTCACTGAAATGAACAAACTTTGGGTGAAACATCAAGGGCTTGTCCAGGAAAAAGAGAATACTCCTCCATTTACAGAACCCACTCCCTCTCATATCTTGAGAGAGAGAATAGATAGTTACGGAAGGGAAGGATTAGCAAGACAGTATATAAGATCGAAGGTCCCTCATTTACAATGGACTCCTGAACTTTCTCGTTGCTTTATTCACGGCATTGACACCCTTGGAGATCATCACAAGGCCACACCTAAGCTTGTTCTTCAAATGATGGATGTCAAAGGCCTCACTATTTCTCACGTCAAGAGCCATCTCCTAATGTACAGAAGCATGAGAGGTGATTTGGACAGACAAGGAAGGGCATCGAGCCATCACAGAAAACAATCTTTTGAGGAACATGATGATGGGAGTGTTGATGAAGAAATGAAATTATCGAGGAGGCACGAAGGATTTGATGTACCCCTGCTTGAGCATACAAGAAACAGAGGTGGAGATAGTGAGAACCTGAAGCAAAACGAGGGGGAGAGCCCAAAAAACAAAAAACAAAAAATATGTGCAGGAACAAAGAAGGGTTGA 1125 0.4249 MRVEDLWNAKEPQLSSNEKLNACFESIPVSTLPSAPTNKVVEIKSDATLPKSVEILARNNILSKEFFHLEQFDYEGLHLAESTSSQLLTDQLFEHPCKGGEPMMENAVHSVLSCYEEKMSTKIDGKPCQPADTKKLPMAYVKSTLEPSSLSCXSERLGRLRDAQRRDTEQGADSVMDAIEFVLLKFTEMNKLWVKHQGLVQEKENTPPFTEPTPSHILRERIDSYGREGLARQYIRSKVPHLQWTPELSRCFIHGIDTLGDHHKATPKLVLQMMDVKGLTISHVKSHLLMYRSMRGDLDRQGRASSHHRKQSFEEHDDGSVDEEMKLSRRHEGFDVPLLEHTRNRGGDSENLKQNEGESPKNKKQKICAGTKKG 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0408 374 MobiDBLite consensus disorder prediction 299 374 - -
Dere05g0408 374 SUPERFAMILY Homeodomain-like 239 293 IPR009057 -
Dere05g0408 374 Gene3D - 239 295 - -
Dere05g0408 374 NCBIfam myb-like DNA-binding domain, SHAQKYF class 241 293 IPR006447 GO:0003677
Dere05g0408 374 MobiDBLite consensus disorder prediction 299 365 - -
Dere05g0408 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 213 327 IPR046955 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0408 Dere-ChrDere05 6068856 6073229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0408 226 295 G2-like Transcription Factor Family AT1G14600 67.143 1.30e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere05g0408 Vps35 4.2e-06 No_clan