Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0397 ATGGAAGTGCTGGGTGAGGTTAAAATTAGGTCAGATGAACATAAGAGTGAGGAAGAAGAAGCTATGCCTCCTGGGTTTAGATTTCACCCTACAGATGAAGAGCTTGTAGGGTATTATCTGCAGAGAAAGGTAGAGAAGAAGCCTCTTCGGATCGAACTCATCATGCAGATTAACATCTACGAATACGACCCTTGGGATCTTCCAAGGAGTAGCAACGTGGAGGGGGAAAAAGAAGGGTACTTCTTCTGCAGGAGAGGGAGAAAATACAGAAACAGCGAGAGGCCTAACAGGGTGACCTTGAGAGGCTCAGGCTTCTGGAAAGCCACTGGCATTGACAAACCTATTTATGGAGTTGCAGACTCAGACAGAGACACACGCGCACACACTCACATCATTGGCCTTAAGAAGTCCTTAGTCTATTACCGTGGAGCTGCTGGCAGAGCCTCCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCCCACAGAAACACTGCTCCACCACGCAATTCAGCTTCTGCCATTGATGGCCGTCTTCAAGAAGCTGAAGTGTGGACACTCTGCAAAATATTCAAACGAACCCCATCTTACAAAAAGTACACAGAAGCAGCCACCAAACCCAGTCCAGCTCATTCAACTTCTGAAACAATCAGCTTAGGATCTGACGTTAATGGCAAACCATGCCTCACTTTCAAAGACTCGCTGATCATTCAACAGACTGATGAAAGGAAGCAGATTATAAATAATATTGAAAAGGTTGAAGATGAAAGAAACCACTTGTTTCTGGGTCAATTAGCTCAATCTCCACCACCACTAGTGTCTTACCCTAGCTCTTGGAATTCTGGTGTGGTGGAGGAGGAGGAGGAGGATGTATTTGCAAATGGAAACTGGGATGAGCTACGACCTATGATTGAGTTAGCCATGGATTATTCATCCATCCAAAGCTTATTATGA 954 0.4507 MEVLGEVKIRSDEHKSEEEEAMPPGFRFHPTDEELVGYYLQRKVEKKPLRIELIMQINIYEYDPWDLPRSSNVEGEKEGYFFCRRGRKYRNSERPNRVTLRGSGFWKATGIDKPIYGVADSDRDTRAHTHIIGLKKSLVYYRGAAGRASKTDWMMHEFRLPHRNTAPPRNSASAIDGRLQEAEVWTLCKIFKRTPSYKKYTEAATKPSPAHSTSETISLGSDVNGKPCLTFKDSLIIQQTDERKQIINNIEKVEDERNHLFLGQLAQSPPPLVSYPSSWNSGVVEEEEEDVFANGNWDELRPMIELAMDYSSIQSLL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0397 317 ProSiteProfiles NAC domain profile. 22 193 IPR003441 GO:0003677|GO:0006355
Dere05g0397 317 SUPERFAMILY NAC domain 18 192 IPR036093 GO:0003677|GO:0006355
Dere05g0397 317 Coils Coil 236 256 - -
Dere05g0397 317 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 238 - -
Dere05g0397 317 Gene3D NAC domain 31 198 IPR036093 GO:0003677|GO:0006355
Dere05g0397 317 Pfam No apical meristem (NAM) protein 23 160 IPR003441 GO:0003677|GO:0006355
Dere05g0397 317 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0397 Dere-ChrDere05 5719555 5722909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0397 7 223 NAC Transcription Factor Family AT5G39820 46.250 5.21e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere05g0397 NAM 1.6e-34 No_clan