Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere05g0369 | ATGAACGATAGTGGTCCTGCTTACAATTTTCAGAGAAATAACAGCTTCACTAATCAAAAGAATCCCATGGGGCCAGACCGAGAATTTGTAGAGCTCCTATGGCAAAATGGACAGGTAGTTTTGCACAGCCAAACACATAGGAAACCAGTTTTGAATTCTGTAGACTCAAGGCAAGTGCAGAACAATGATCAATCAACATTAAGAACTAGTGGATCATATGGTAACTCAAGTAATTTGTTTCATGAAGATGAAACAGTCTCATGGATCCAATACCCTTTTGAAGATCCATTGGAGCAAGAATTATGTTCAAACTTTTTGCCTGAACTTCCATCCTGTGAAGTTGAACCTGATAAGCCAAATAAGAAATTTGAAGAAGAGAAGTTTGCCAAATCTGGTATCTACAATACCCCCCATGTGACTGCAAGCTCACAACCACCTAATATGAAACTGTCCTCTGTTCAGAAATTCTCAGGAAATGCTATCCCTTCTCCAAGATTTCATTTCCCTGATTCATCTCAGAAAGACATTGACTTTAGTGGGTCACAAAAAGTCCTCAATTTTTCTCCATTGTCAGCAATTCCCAAGGTTGGTTCCGCATCTTCTAATGCACAACATGGAGAAAAAGGTACAGGTAATATGTTGCAAAGTGAGGCTAGAGATGGCTCAGTGATGACAGTTGGTTCAAGTCACTGTGGCAGCAATCAAATTCCTCGAGATGTGAGCAGGTTATCCAGCAATGGTGTTTGGACTACTAGTTTGTCAGCCGAGCCTTCACCCTTTAGGGATAATGTGCAGCGAACTCTTACCACAGGTGAAAAAGGGAAATCAGAAACGCATGAACCAGCTGTCACTTCATCTTCTGGTGGCTCAGACAGCAGTCTCGGAAAAACTTGTTGCCAATCTACTAGAACCCACAGCCAAAAAAGAAAAGGAACAGATGCAGAAGAATTAGAAGAACAAAGTGAGGCCACAGAACACAAACAAATAGCTAGAAACAAGGCAGCTCAGCGGACAGGGTCTTCCCGAAGGAACCGTGCTGCTGAAGTGCATAATCTCTCAGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGAGGGCATTGCAACAACTCATACCTCACAGTAACAAGACGGACAAAGCATCAATGTTAGATGAGGCAATAGAATATTTGAAATCACTTCAATTGCAGCTTCAGGTAATGTGGATGGGAGCTGGCATGACACCAATGATGTTTCCAGGAATTCAGCATTATATGTCCCAAATGGGTATGGGAATGGCTTCATCTTCTGTGCCTCCTATTCACAATCATATGAATATACCAAGAGTGCCACTTGATCAATCCATATCTATGGCACAGACGCCAAACCAGACCGTACCATTCCAAGCTCCTCTTTTGGGTCCCTTTAATTATCAAAATCAGATGCAAAATCAAGCTCTTTCAGAGCAATATGCACGTTTTATGGGCTATCATCTTATGCACAGTGCCTCTCAGCCTTTGAATGCATTCAGATATGGTTCCCAGTCAGCACAACATAGTCAAACAATGTTTCCACCCAGCAATAGCAATGGACCCCTGACTGGAGCAGCTAATACTGATGATGCTGTTGGTGGCAAGATGGGTAAGCCACTTTAA | 1635 | 0.4232 | MNDSGPAYNFQRNNSFTNQKNPMGPDREFVELLWQNGQVVLHSQTHRKPVLNSVDSRQVQNNDQSTLRTSGSYGNSSNLFHEDETVSWIQYPFEDPLEQELCSNFLPELPSCEVEPDKPNKKFEEEKFAKSGIYNTPHVTASSQPPNMKLSSVQKFSGNAIPSPRFHFPDSSQKDIDFSGSQKVLNFSPLSAIPKVGSASSNAQHGEKGTGNMLQSEARDGSVMTVGSSHCGSNQIPRDVSRLSSNGVWTTSLSAEPSPFRDNVQRTLTTGEKGKSETHEPAVTSSSGGSDSSLGKTCCQSTRTHSQKRKGTDAEELEEQSEATEHKQIARNKAAQRTGSSRRNRAAEVHNLSERRRRDRINEKMRALQQLIPHSNKTDKASMLDEAIEYLKSLQLQLQVMWMGAGMTPMMFPGIQHYMSQMGMGMASSSVPPIHNHMNIPRVPLDQSISMAQTPNQTVPFQAPLLGPFNYQNQMQNQALSEQYARFMGYHLMHSASQPLNAFRYGSQSAQHSQTMFPPSNSNGPLTGAANTDDAVGGKMGKPL | 544 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere05g0369 | 544 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Dere05g0369 | 544 | MobiDBLite | consensus disorder prediction | 280 | 305 | - | - | |
| Dere05g0369 | 544 | FunFam | Basic helix-loop-helix transcription factor | 340 | 403 | - | - | |
| Dere05g0369 | 544 | PANTHER | TRANSCRIPTION FACTOR PIF3 | 11 | 514 | IPR044273 | GO:0003700|GO:0006355 | |
| Dere05g0369 | 544 | MobiDBLite | consensus disorder prediction | 506 | 544 | - | - | |
| Dere05g0369 | 544 | Pfam | Helix-loop-helix DNA-binding domain | 349 | 395 | IPR011598 | GO:0046983 | |
| Dere05g0369 | 544 | CDD | bHLH_AtPIF_like | 345 | 408 | IPR047265 | - | |
| Dere05g0369 | 544 | MobiDBLite | consensus disorder prediction | 506 | 529 | - | - | |
| Dere05g0369 | 544 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Dere05g0369 | 544 | MobiDBLite | consensus disorder prediction | 221 | 243 | - | - | |
| Dere05g0369 | 544 | Gene3D | - | 340 | 401 | IPR036638 | GO:0046983 | |
| Dere05g0369 | 544 | MobiDBLite | consensus disorder prediction | 343 | 358 | - | - | |
| Dere05g0369 | 544 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 342 | 410 | IPR036638 | GO:0046983 | |
| Dere05g0369 | 544 | SMART | finulus | 351 | 400 | IPR011598 | GO:0046983 | |
| Dere05g0369 | 544 | MobiDBLite | consensus disorder prediction | 46 | 76 | - | - | |
| Dere05g0369 | 544 | MobiDBLite | consensus disorder prediction | 269 | 358 | - | - | |
| Dere05g0369 | 544 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 345 | 394 | IPR011598 | GO:0046983 | |
| Dere05g0369 | 544 | MobiDBLite | consensus disorder prediction | 306 | 332 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere05g0369 | Dere-ChrDere05 | 5297963 | 5300588 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere05g0369 | 8 | 98 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT3G59060 | 39.000 | 2.87e-12 | 67.0 |
Transcription factors information