Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0359 ATGAGGCTTTCTTCTTCCGGACTAGGTCAACCGGCCCAAGAAGGGGAGAAAAAATGTTTGAATTCTGAACTATGGCATGCATGTGCTGGTCCTCTGGTGTCTCTGCCTCCAGTTGGAAGTCGTGTGGTCTACTTTCCTCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACAAACAAGGAAGTAGATGCACATATTCCCAATTACCCTAACTTACCACCACAGCTTATATGTCAGCTTCACAATGTGACAATGCATGCAGATGTGGAAACAGATGAAGTATATGCTCAAATGACCCTGCAACCTTTAAGTCTGCAAGAGCAAAAGGATGCATATCTCCTGCCTGCAGAATTGGGTACTCCCAGCAAACAACCGACCAACTATTTCTGTAAAACATTAACTGCAAGTGATACCAGCACTCATGGAGGATTCTCTGTTCCACGAAGAGCAGCTGAAAAAGTCTTCCCTCCTCTTGATTACTCGCAGCAGCCTCCTGCACAAGAACTAATTGCTAGGGATCTTCATGATAATGAATGGAAATTCAGACATATTTTTAGAGGTCAGCCCAAGAGACATCTTCTCACTACAGGGTGGAGCATCTTTGTTAGTGCTAAGAGGCTTGTTGCCGGTGATTCAGTCCTTTTTATATGGAATGACAAAAATCAATTACTCTTGGGTATCCGGCGAGCTAATCGTCCGCAGACTGTCATGCCATCCTCGGTTCTGTCAAGTGATAGCATGCATATAGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCCACAAATAGCCGCTTTACTATATTCTACAATCCTAGGGCAAGCCCATCAGAATTTGTTATTCCCTTGGCCAAGTATGTTAAAGCTGTATATCATACTCGAGTTTCTGTTGGCATGCGATTCAGGATGCTCTTTGAGACAGAAGAATCAAGTGTTCGTAGATACATGGGTACTATAACAGGCATTAGTGATTTAGATCATGTTCGCTGGTCAAATTCACACTGGCGTTCTGTAAAGGTTGGCTGGGATGAGTCCACTGCAGGGGAGAGACAGCCAAGAGTTTCCTTGTGGGAGATCGAACCGTTGACAACATTCCCTATGTATCCGTCCCCATTCCCTCTGAGGCTGAAACGCCCTTGGCCATCAGGACTACCTTCTTTCTATGGTGTCAAGGATGCTGACATGAGTAGCATTAGTTCTCCATTCATGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAGTCTCTGAACTTCCAGGGACTTGGGGTTACACCGTGGATGCAGCCTAGACTTGATGCTTCTATATCAGGTCTCCAGCCAGAGATATACCAAGCAATGGCTGCTGCTGCACTCCAGGAAATGAGATCACTGGGTCCATCTAAATCTTCTTCCCAATCTCTGCTGCAGTTTCAGCAGTCTTCAAATGTTCCTGGTGCTCCTACTTCTGGAATTCAGAGGCAAATGTTACAGCAGTCACAGTCCCAGTCCCAAAATACCCTTCTACAGAACTTTCAAGAAAACCAGGTTCCTGCTCAGTCTCCACTTCTGCAACGACAGTTGCAGCGTTACCATCCATATAATGATCAGAGGCAACAGCAGCAGCAGCAGCAACTTAACAATTTGCCTGGTCAGCAGCAGATCTCAAATGCCATCTCTCCTTTATCTAATTTTGCTTCAGCTACCCAGTCTCTCTCTCCATCCATGCATGCCATAGCTTCAAATTGCCAACAGCAGAGTTTTCCCGAACCTGCCAGGAACCAAATTTCCAGCTCTGATGTTTCTCCTATCCATAGTCTATTAGGATCATTTTCCCAGGATGGAGCATCCCAGTTACTATACTTAAATGGGTCCAACTCTGTGGTCTCTCCTGCTTCCTTACTACCCAAGCAAATAACTGTTGAACCTCAGATTCAATCAGCTACTGCTCAGTGTGTATTGCCCCAGGTGGAAAACTTGGGAACACCCCCATCAAATGTATCTGAACTTCCTATTTTGCCTCCATTTCCTGGAAGAGAATATTCTGCATACCAAGGTGCTGCTGATCCTCAGTCCAATCTGTTGTTTGGGGTTAACATTGATCCTTCTCTGATGTTACAAAATGGCATGTCAAACCTGAGAAACGTTGGCAATGAGAATGATTCATTATCGATGCCATTTTCTGCTTCAAACTTTGCTGGTGCTACAGGGACTGATTTTCCACCAAGTTCAGACATGACAACATCAAGTTGTGTGGATGAATCAGGCTTCTTGCAGTCTTCTGAAAATGTGGACCAGGCAAATACGTCTACTAGAACCTTTGTTAAGGTTCACAAGTCAGGGTGCTTTGGGAGGTCACTGGACATCTCTAAGTTCAGCAGCTATGATGAACTGCGCAGTGAGCTTGCCCGCATGTTTGGCCTTGAAGGCCAACTAGAGAACCCTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATCAAGATATTGTCTCCACTTGAAGTGCTACAAATGGGCAAAGGTGTTGGTCCCACTCCTGCTTCATTGGGTCACAAGCTTTCTACTACTAGCAACACTTGCGAACAATATGGGAGTCAACATGAGTTGAGAAGTTCGAACAATGGCATTGCGTCAATGGGTTCTCTTGACTACTAG 2694 0.4566 MRLSSSGLGQPAQEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSLQEQKDAYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDHVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSFYGVKDADMSSISSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPRLDASISGLQPEIYQAMAAAALQEMRSLGPSKSSSQSLLQFQQSSNVPGAPTSGIQRQMLQQSQSQSQNTLLQNFQENQVPAQSPLLQRQLQRYHPYNDQRQQQQQQQLNNLPGQQQISNAISPLSNFASATQSLSPSMHAIASNCQQQSFPEPARNQISSSDVSPIHSLLGSFSQDGASQLLYLNGSNSVVSPASLLPKQITVEPQIQSATAQCVLPQVENLGTPPSNVSELPILPPFPGREYSAYQGAADPQSNLLFGVNIDPSLMLQNGMSNLRNVGNENDSLSMPFSASNFAGATGTDFPPSSDMTTSSCVDESGFLQSSENVDQANTSTRTFVKVHKSGCFGRSLDISKFSSYDELRSELARMFGLEGQLENPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVLQMGKGVGPTPASLGHKLSTTSNTCEQYGSQHELRSSNNGIASMGSLDY 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0359 897 MobiDBLite consensus disorder prediction 875 897 - -
Dere05g0359 897 ProSiteProfiles PB1 domain profile. 763 847 IPR000270 GO:0005515
Dere05g0359 897 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Dere05g0359 897 FunFam Auxin response factor 126 230 - -
Dere05g0359 897 Pfam AUX/IAA family 753 845 IPR033389 -
Dere05g0359 897 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Dere05g0359 897 FunFam Auxin response factor 758 852 - -
Dere05g0359 897 SUPERFAMILY CAD & PB1 domains 756 837 - -
Dere05g0359 897 Gene3D - 758 852 - -
Dere05g0359 897 Gene3D - 126 229 IPR015300 -
Dere05g0359 897 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere05g0359 897 SMART B3_2 128 230 IPR003340 GO:0003677
Dere05g0359 897 CDD B3_DNA 127 228 IPR003340 GO:0003677
Dere05g0359 897 Gene3D - 292 364 - -
Dere05g0359 897 FunFam Auxin response factor 292 364 - -
Dere05g0359 897 SUPERFAMILY DNA-binding pseudobarrel domain 113 257 IPR015300 -
Dere05g0359 897 MobiDBLite consensus disorder prediction 457 497 - -
Dere05g0359 897 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 852 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0359 Dere-ChrDere05 5155861 5166348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0359 1 487 B3 DNA Binding Superfamily AT1G30330 85.132 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere05g0359 AUX_IAA 6.1e-08 CL0072